Evidence map›Paper›PMID 19103668›Full record

ArticleHuman molecular genetics2009

Expansion of the human mu-opioid receptor gene architecture: novel functional variants.

Svetlana A Shabalina, Dmitri V Zaykin, Pavel Gris, Aleksey Y Ogurtsov, Josee Gauthier, Kyoko Shibata, Inna E Tchivileva, Inna Belfer, Bikashkumar Mishra, Carly Kiselycznyk and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed, 1 pooled it
5.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 1 synthesis or guideline pooled it, 174 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Trial
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. OPRM1 Gene Polymorphism in Women with Alcohol Use Disorder.International journal of molecular sciences · 2024
    Article
  11. Epigenetic Modulation of Opioid Receptors by Drugs of Abuse.International journal of molecular sciences · 2022
    Review
  12. Modulation of OPRM1 Alternative Splicing by Morphine and HIV-1 Nef.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2022
    Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 1 country.

Svetlana A ShabalinaNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.
Dmitri V Zaykin
Pavel Gris
Aleksey Y Ogurtsov
Josee Gauthier
Kyoko Shibata
Inna E Tchivileva
Inna Belfer
Bikashkumar Mishra
Carly Kiselycznyk
Margaret R Wallace
Roland Staud
Nikolay A Spiridonov
Mitchell B Max
David Goldman
Roger B Fillingim
William Maixner
Luda Diatchenko
University of North Carolina at Chapel Hill · USUniversity of Florida · USNational Institute of Dental and Craniofacial Research · USNational Institute of Environmental Health Sciences · USNational Institutes of Health · USCenter for Drug Evaluation and Research · USNational Center for Biotechnology Information · USNational Institute on Alcohol Abuse and Alcoholism · USUniversity of Pittsburgh · US

Funding

Integrative genetics of behavior with high throughput technologiesZIAAA000301 · NIAAA · NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM · PI GOLDMAN, DAVID · 2009 to 2025
$68.6M
Risk Factors for Onset and Persistence of TMDU01DE017018 · NIDCR · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DIATCHENKO, LUDA, FILLINGIM, ROGER B · 2005 to 2016
$35.9M
Vulvar Vestibulitis syndrome (VVS)P01NS045685 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ESSICK, GREGORY KENT · 2004 to 2014
$12.5M
Statistical, population genetics and genetic epidemiologyZIAES101866 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI ZAYKIN, DMITRI V · 2009 to 2021
$5.8M
Sex-Related Genetic Influences on Pain and AnalgesiaR01NS041670 · NINDS · UNIVERSITY OF FLORIDA · PI FILLINGIM, ROGER B · 2000 to 2009
$4.4M
COMT &betaAR Polymorphism &Development of Painful TMDR01DE016558 · NIDCR · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DIATCHENKO, LUDA · 2005 to 2009
$1.7M
Intramural NIH HHSNIDCR NIH HHS R01 DE016558NIDCR NIH HHS R01-DE16558NIDCR NIH HHS U01 DE017018NIDCR NIH HHS U01-DE017018NINDS NIH HHS NS41670NINDS NIH HHS P01 NS045685
6 · The paper itself

Abstract

The mu-opioid receptor (OPRM1) is the principal receptor target for both endogenous and exogenous opioid analgesics. There are substantial individual differences in human responses to painful stimuli and to opiate drugs that are attributed to genetic variations in OPRM1. In searching for new functional variants, we employed comparative genome analysis and obtained evidence for the existence of an expanded human OPRM1 gene locus with new promoters, alternative exons and regulatory elements. Examination of polymorphisms within the human OPRM1 gene locus identified strong association between single nucleotide polymorphism (SNP) rs563649 and individual variations in pain perception. SNP rs563649 is located within a structurally conserved internal ribosome entry site (IRES) in the 5'-UTR of a novel exon 13-containing OPRM1 isoforms (MOR-1K) and affects both mRNA levels and translation efficiency of these variants. Furthermore, rs563649 exhibits very strong linkage disequilibrium throughout the entire OPRM1 gene locus and thus affects the functional contribution of the corresponding haplotype that includes other functional OPRM1 SNPs. Our results provide evidence for an essential role for MOR-1K isoforms in nociceptive signaling and suggest that genetic variations in alternative OPRM1 isoforms may contribute to individual differences in opiate responses.

Indexed as

AdolescentAdultAllelesAnimalsBase SequenceCohort StudiesExonsFemaleGenetic Predisposition to DiseaseHaplotypesHumansIntronsMiceMolecular Sequence DataNucleic Acid ConformationPainOPRM1 protein, humanProtein IsoformsReceptors, Opioid, mu

Identifiers

PMID19103668
PMCPMC2649019
OpenAlexW2112902993

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.