Evidence map›Paper›PMID 19101574›Full record

ReviewMutation research2009

The Fanconi anemia/BRCA gene network in zebrafish: embryonic expression and comparative genomics.

Tom A Titus, Yi-Lin Yan, Catherine Wilson, Amber M Starks, Jonathan D Frohnmayer, Ruth A Bremiller, Cristian Cañestro, Adriana Rodriguez-Mari, Xinjun He, John H Postlethwait

Abstract readReview
In one paragraph

Review in Mutation research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Screening and identification of novel candidate biomarkers of focal cortical dysplasia type II via bioinformatics analysis.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2022
    Article
  8. Article
  9. Zebrafish Cancer Predisposition Models.Frontiers in cell and developmental biology · 2021
    Review
  10. Article
  11. Article
  12. The zebrafish: A fintastic model for hematopoietic development and disease.Wiley interdisciplinary reviews. Developmental biology · 2018
    Review
  13. Scaling up to studyCancer cell & microenvironment · 2018
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. brca2 in zebrafish ovarian development, spermatogenesis, and tumorigenesis.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Tom A TitusInstitute of Neuroscience, University of Oregon, 1425 E. 13th Avenue, Eugene, OR 97403, USA.
Yi-Lin Yan
Catherine Wilson
Amber M Starks
Jonathan D Frohnmayer
Ruth A Bremiller
Cristian Cañestro
Adriana Rodriguez-Mari
Xinjun He
John H Postlethwait
University of Oregon · US

Funding

Zebrafish FacilityP01HD022486 · NICHD · UNIVERSITY OF OREGON · PI PARTHASARATHY, RAGHUVEER · 1987 to 2017
$28.8M
RESOURCES FOR TELEOST GENE DUPLICATES AND HUMAN DISEASER01RR020833 · NCRR · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN H. · 2005 to 2011
$3.6M
GENOMIC ANALYSIS OF ZEBRAFISH DEVELOPMENTR01RR010715 · NCRR · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN HARVEY · 1995 to 2006
$3.1M
NCRR NIH HHS R01 RR010715NCRR NIH HHS R01 RR020833NCRR NIH HHS R01 RR10715NICHD NIH HHS P01 HD022486NICHD NIH HHS P01HD22486
6 · The paper itself

Abstract

Fanconi anemia (FA) is a genetic disease resulting in bone marrow failure, high cancer risks, and infertility, and developmental anomalies including microphthalmia, microcephaly, hypoplastic radius and thumb. Here we present cDNA sequences, genetic mapping, and genomic analyses for the four previously undescribed zebrafish FA genes (fanci, fancj, fancm, and fancn), and show that they reverted to single copy after the teleost genome duplication. We tested the hypothesis that FA genes are expressed during embryonic development in tissues that are disrupted in human patients by investigating fanc gene expression patterns. We found fanc gene maternal message, which can provide Fanc proteins to repair DNA damage encountered in rapid cleavage divisions. Zygotic expression was broad but especially strong in eyes, central nervous system and hematopoietic tissues. In the pectoral fin bud at hatching, fanc genes were expressed specifically in the apical ectodermal ridge, a signaling center for fin/limb development that may be relevant to the radius/thumb anomaly of FA patients. Hatching embryos expressed fanc genes strongly in the oral epithelium, a site of squamous cell carcinomas in FA patients. Larval and adult zebrafish expressed fanc genes in proliferative regions of the brain, which may be related to microcephaly in FA. Mature ovaries and testes expressed fanc genes in specific stages of oocyte and spermatocyte development, which may be related to DNA repair during homologous recombination in meiosis and to infertility in human patients. The intestine strongly expressed some fanc genes specifically in proliferative zones. Our results show that zebrafish has a complete complement of fanc genes in single copy and that these genes are expressed in zebrafish embryos and adults in proliferative tissues that are often affected in FA patients. These results support the notion that zebrafish offers an attractive experimental system to help unravel mechanisms relevant not only to FA, but also to breast cancer, given the involvement of fancj (brip1), fancn (palb2) and fancd1 (brca2) in both conditions.

Indexed as

Models, AnimalAnimalsDNA RepairFanconi AnemiaFanconi Anemia Complementation Group ProteinsGene ExpressionHumansZebrafishFanconi Anemia Complementation Group Proteins

Identifiers

PMID19101574
PMCPMC2714409
OpenAlexW2065164670

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.