Evidence map›Paper›PMID 19098282›Full record

ArticleJournal of lipid research2009

Semisynthesis and segmental isotope labeling of the apoE3 N-terminal domain using expressed protein ligation.

Paul S Hauser, Vincent Raussens, Taichi Yamamoto, Gezman E Abdullahi, Paul M M Weers, Brian D Sykes, Robert O Ryan

Open access · hybridAbstract read
In one paragraph

Article in Journal of lipid research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Paul S HauserCenter for Prevention of Obesity, Diabetes, and Cardiovascular Disease, Children's Hospital Oakland Research Institute, Oakland, CA 94609, USA.
Vincent Raussens
Taichi Yamamoto
Gezman E Abdullahi
Paul M M Weers
Brian D Sykes
Robert O Ryan
California State University, Long Beach · USUniversity of California, Berkeley · USUniversité Libre de Bruxelles · BEUniversity of Alberta · CA

Funding

Yeast Endosome to Vacuole Mutants--Evaluation/CloningS06GM063119 · NIGMS · CALIFORNIA STATE UNIVERSITY LONG BEACH · PI KINGSFORD, LAURA · 2001 to 2008
$12.1M
Effect of Apolipoprotein Structural AdaptabilityR37HL064159 · NHLBI · UNIVERSITY OF NEVADA RENO · PI RYAN, ROBERT O'MARA · 2010 to 2019
$4.1M
EFFECT OF APOLIPOPROTEIN STRUCTURAL ADAPTABILITYR01HL064159 · NHLBI · CHILDREN'S HOSPITAL &RES CTR AT OAKLAND · PI RYAN, ROBERT O'MARA · 2000 to 2009
$3.6M
NHLBI NIH HHS HL 64159NHLBI NIH HHS R01 HL064159NHLBI NIH HHS R37 HL064159NIGMS NIH HHS GM 063119-07NIGMS NIH HHS S06 GM063119
6 · The paper itself

Abstract

Apolipoprotein E (apoE) is an exchangeable apolipoprotein that functions as a ligand for members of the LDL receptor family, promoting lipoprotein clearance from the circulation. Productive receptor binding requires that apoE adopt an LDL receptor-active conformation through lipid association, and studies have shown that the 22 kDa N-terminal (NT) domain (residues 1-183) of apoE is both necessary and sufficient for receptor interaction. Using intein-mediated expressed protein ligation (EPL), a semisynthetic apoE3 NT has been generated for use in structure-function studies designed to probe the nature of the lipid-associated conformation of the protein. Circular dichroism spectroscopy of EPL-generated apoE3 NT revealed a secondary structure content similar to wild-type apoE3 NT. Likewise, lipid and LDL receptor binding studies revealed that EPL-generated apoE3 NT is functional. Subsequently, EPL was used to construct an apoE3 NT enriched with 15N solely and specifically in residues 112-183. 1H-15N heteronuclear single quantum correlation spectroscopy experiments revealed that the ligation product is correctly folded in solution, adopting a conformation similar to wild-type apoE3-NT. The results indicate that segmental isotope labeling can be used to define the lipid bound conformation of the receptor binding element of apoE as well as molecular details of its interaction with the LDL receptor.

Indexed as

Amino Acid SequenceApolipoprotein E3Binding SitesEscherichia coliHumansInteinsIsotope LabelingLigandsNitrogen IsotopesNuclear Magnetic Resonance, BiomolecularProtein Structure, SecondaryProtein Structure, TertiaryReceptors, LDLRecombinant Fusion ProteinsApolipoprotein E3LigandsNitrogen IsotopesReceptors, LDLRecombinant Fusion Proteins

Identifiers

PMID19098282
PMCPMC2724048
OpenAlexW2084466285

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.