Evidence map›Paper›PMID 19095660›Full record

ArticleThe Journal of biological chemistry2009

Mechanism of allosteric inhibition of N-acetyl-L-glutamate synthase by L-arginine.

Li Min, Zhongmin Jin, Ljubica Caldovic, Hiroki Morizono, Norma M Allewell, Mendel Tuchman, Dashuang Shi

Open access · hybridAbstract readComparative Study
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  7. The N-Acetylglutamate Synthase Family: Structures, Function and Mechanisms.International journal of molecular sciences · 2015
    Review
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  16. Article
  17. N-acetylglutamate synthase: structure, function and defects.Molecular genetics and metabolism · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Li MinResearch Center for Genetic Medicine, Children's National Medical Center, The George Washington University, Washington, D. C. 20010, USA.
Zhongmin Jin
Ljubica Caldovic
Hiroki Morizono
Norma M Allewell
Mendel Tuchman
Dashuang Shi
Children's National · USGeorge Washington University · USArgonne National Laboratory · USUniversity of Maryland, College Park · US

Funding

N-acetylglutamate Synthase: Structure, Function & DefectsR01DK064913 · NIDDK · CHILDREN'S RESEARCH INSTITUTE · PI CALDOVIC, LJUBICA MORIZONO · 2003 to 2017
$4.9M
Structural Studies of NAGSK01DK067935 · NIDDK · CHILDREN'S RESEARCH INSTITUTE · PI SHI, DASHUANG · 2004 to 2006
$373k
NIDDK NIH HHS DK064913NIDDK NIH HHS DK067935NIDDK NIH HHS R01 DK064913
6 · The paper itself

Abstract

N-Acetylglutamate synthase (NAGS) catalyzes the first committed step in l-arginine biosynthesis in plants and micro-organisms and is subject to feedback inhibition by l-arginine. This study compares the crystal structures of NAGS from Neisseria gonorrhoeae (ngNAGS) in the inactive T-state with l-arginine bound and in the active R-state complexed with CoA and l-glutamate. Under all of the conditions examined, the enzyme consists of two stacked trimers. Each monomer has two domains: an amino acid kinase (AAK) domain with an AAK-like fold but lacking kinase activity and an N-acetyltransferase (NAT) domain homologous to other GCN5-related transferases. Binding of l-arginine to the AAK domain induces a global conformational change that increases the diameter of the hexamer by approximately 10 A and decreases its height by approximately 20A(.) AAK dimers move 5A outward along their 2-fold axes, and their tilt relative to the plane of the hexamer decreases by approximately 4 degrees . The NAT domains rotate approximately 109 degrees relative to AAK domains enabling new interdomain interactions. Interactions between AAK and NAT domains on different subunits also change. Local motions of several loops at the l-arginine-binding site enable the protein to close around the bound ligand, whereas several loops at the NAT active site become disordered, markedly reducing enzymatic specific activity.

Indexed as

Allosteric RegulationAmino-Acid N-AcetyltransferaseArginineBacterial ProteinsCrystallography, X-RayDimerizationNeisseria gonorrhoeaeProtein Structure, QuaternaryProtein Structure, SecondaryProtein Structure, TertiaryStructural Homology, ProteinAmino-Acid N-AcetyltransferaseArginineBacterial Proteins

Identifiers

PMID19095660
PMCPMC2643497
OpenAlexW2009244964

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.