Evidence map›Paper›PMID 19091689›Full record

ArticleJournal of the Royal Society, Interface2009

POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data.

Joana P Gonçalves, Mário Grãos, André X C N Valente

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. MiR-574-5p: A Circulating Marker of Thoracic Aortic Aneurysm.International journal of molecular sciences · 2019
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Functional organization of the yeast proteome by a yeast interactome map.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Joana P GonçalvesUnidade de Sistemas Biológicos, Biocant, Cantanhede, Portugal.
Mário Grãos
André X C N Valente

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polar Mapper is a computational application for exposing the architecture of protein interaction networks. It facilitates the system-level analysis of mRNA expression data in the context of the underlying protein interaction network. Preliminary analysis of a human protein interaction network and comparison of the yeast oxidative stress and heat shock gene expression responses are addressed as case studies.

Indexed as

Models, BiologicalSoftwareUser-Computer InterfaceComputer SimulationProtein Interaction MappingProteomeRNA, MessengerSignal TransductionSystems IntegrationProteomeRNA, Messenger

Identifiers

PMID19091689
PMCPMC2684442

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.