Evidence map›Paper›PMID 19087957›Full record

ArticleGenetics2009

The Ras/cAMP pathway and the CDK-like kinase Ime2 regulate the MAPK Smk1 and spore morphogenesis in Saccharomyces cerevisiae.

Christine M McDonald, Marisa Wagner, Maitreya J Dunham, Marcus E Shin, Noreen T Ahmed, Edward Winter

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Meiotic Cytokinesis inJournal of fungi (Basel, Switzerland) · 2024
    Review
  5. Article
  6. Cadmium Sulfide Quantum Dots Adversely Affect Gametogenesis inNanomaterials (Basel, Switzerland) · 2022
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. The Kinome of Edible and Medicinal FungusFrontiers in microbiology · 2016
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Ras signaling in yeast.Genes & cancer · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Christine M McDonaldDepartment of Genome Science, University of Washington, Seattle, Washington 98195, USA.
Marisa Wagner
Maitreya J Dunham
Marcus E Shin
Noreen T Ahmed
Edward Winter
Thomas Jefferson University · USUniversity of Washington · US

Funding

Spatial Patterning During DevelopmentP50GM071508 · NIGMS · PRINCETON UNIVERSITY · PI POWELL, SUSAN M · 2004 to 2013
$30.6M
TRAINING PROGRAM IN BIOMOLECULAR SIGNAL TRANSDUCTIONT32DK007705 · NIDDK · THOMAS JEFFERSON UNIVERSITY · PI BENOVIC, JEFFREY L · 1994 to 2008
$2.6M
THE SMKI MAPK AND SPORE DEVELOPMENT IN SACCHAROMYCESR01GM061817 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI WINTER, EDWARD P · 2000 to 2010
$2.1M
NIDDK NIH HHS T32 DK007705NIDDK NIH HHS T32-DK07705NIGMS NIH HHS GM061817NIGMS NIH HHS P50 GM071508NIGMS NIH HHS P50-GM071508NIGMS NIH HHS R01 GM061817
6 · The paper itself

Abstract

Meiotic development (sporulation) in the yeast Saccharomyces cerevisiae is induced by nutritional deprivation. Smk1 is a meiosis-specific MAP kinase homolog that controls spore morphogenesis after the meiotic divisions have taken place. In this study, recessive mutants that suppress the sporulation defect of a smk1-2 temperature-sensitive hypomorph were isolated. The suppressors are partial function alleles of CDC25 and CYR1, which encode the Ras GDP/GTP exchange factor and adenyl cyclase, respectively, and MDS3, which encodes a kelch-domain protein previously implicated in Ras/cAMP signaling. Deletion of PMD1, which encodes a Mds3 paralog, also suppressed the smk1-2 phenotype, and a mds3-Delta pmd1-Delta double mutant was a more potent suppressor than either single mutant. The mds3-Delta, pmd1-Delta, and mds3-Delta pmd1-Delta mutants also exhibited mitotic Ras/cAMP phenotypes in the same rank order. The effect of Ras/cAMP pathway mutations on the smk1-2 phenotype required the presence of low levels of glucose. Ime2 is a meiosis-specific CDK-like kinase that is inhibited by low levels of glucose via its carboxy-terminal regulatory domain. IME2-DeltaC241, which removes the carboxy-terminal domain of Ime2, exacerbated the smk1-2 spore formation phenotype and prevented cyr1 mutations from suppressing smk1-2. Inhibition of Ime2 in meiotic cells shortly after Smk1 is expressed revealed that Ime2 promotes phosphorylation of Smk1's activation loop. These findings demonstrate that nutrients can negatively regulate Smk1 through the Ras/cAMP pathway and that Ime2 is a key activator of Smk1 signaling.

Indexed as

AllelesCell Cycle ProteinsCyclic AMPFungal ProteinsGene ExpressionGenes, FungalGlucoseIntracellular Signaling Peptides and ProteinsMAP Kinase Signaling SystemMeiosisMitogen-Activated Protein KinasesModels, BiologicalMutationPhenotypeProtein KinasesProtein Serine-Threonine KinasesCDC25 protein, S cerevisiaeCell Cycle ProteinsCyclic AMPFungal ProteinsGlucoseIME2 protein, S cerevisiaeIntracellular Signaling Peptides and ProteinsMDS3 protein, S cerevisiaeMitogen-Activated Protein KinasesProtein KinasesProtein Serine-Threonine Kinasesras-GRF1ras ProteinsRepressor ProteinsSaccharomyces cerevisiae ProteinsSmk1 protein, S cerevisiae

Identifiers

PMID19087957
PMCPMC2644944
OpenAlexW1986198073

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.