ArticleBMC plant biology2008
A set of microsatellite markers with long core repeat optimized for grape (Vitis spp.) genotyping.
Article in BMC plant biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.
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45 citing papers in PubMed.
- Diversity parameter calculation from SSR data with varying and higher ploidy levels: an example on pear (Pyrus ssp.) data.BMC research notes · 2026Article
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- Genetic Diversity and Fingerprinting of 231 Mango Germplasm Using Genome SSR Markers.International journal of molecular sciences · 2024Article
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- Chloroplast Genomes ofGenes · 2024Article
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- Multiple-Genome-Based Simple Sequence Repeat Is an Efficient and Successful Method in Genotyping and Classifying Different Jujube Germplasm Resources.Plants (Basel, Switzerland) · 2023Article
- Morphological and Genetic Clonal Diversity within the 'Greco Bianco' Grapevine (Plants (Basel, Switzerland) · 2023Article
- Wild and cultivated olive tree genetic diversity in Greece: a diverse resource in danger of erosion.Frontiers in genetics · 2023Article
- Study of Inter- and Intra-varietal Genetic Variability in Grapevine Cultivars.Plants (Basel, Switzerland) · 2022Article
- Two fingerprinting sets for Humulus lupulus based on KASP and microsatellite markers.PloS one · 2022Article
- Genetic Diversity, Population Structure, and Parentage Analysis of Croatian Grapevine Germplasm.Genes · 2020Article
- A simple means for MHC-Y genotyping in chickens using short tandem repeat sequences.Immunogenetics · 2020Article
- SSR markers developed using next-generation sequencing technology in pineapple,Breeding science · 2020Article
- Genomic Characterization of the Japanese Indigenous Wine GrapeFrontiers in plant science · 2020Article
- Article
- Genetically Independent Tetranucleotide to Hexanucleotide Core Motif SSR Markers for IdentifyingMycobiology · 2019Article
- Population sequencing reveals clonal diversity and ancestral inbreeding in the grapevine cultivar Chardonnay.PLoS genetics · 2018Article
- A set of tetra-nucleotide core motif SSR markers for efficient identification of potato (Breeding science · 2017Article
- Forensic genetics and genomics: Much more than just a human affair.PLoS genetics · 2017Review
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6 authors.
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No grant is acknowledged in the PubMed record.
Abstract
backgroundIndividual fingerprinting based on molecular markers has become a popular tool for studies of population genetics and analysis of genetic diversity in germplasm collections, including the solution of synonymy/homonymy and analysis of paternity and kinship. Genetic profiling of individuals is nowadays based on SSR (Simple Sequence Repeat) markers, which have a number of positive features that make them superior to any other molecular marker developed so far. In humans, SSRs with core repeats three to five nucleotides long are preferred because neighbour alleles are more easily separated and distinguished from each other; while in plants, SSRs with shorter repeats, namely two-nucleotides long, are still in use although they suffer lower separation of neighbour alleles and uncomfortable stuttering.
resultsNew microsatellite markers, containing tri-, tetra-, and penta-nucleotide repeats, were selected from a total of 26,962 perfect microsatellites in the genome sequence of nearly homozogous grapevine PN40024, assembled from reads covering 8.4 X genome equivalents. Long nucleotide repeats were selected for fingerprinting, as previously done in many species including humans. The new grape SSR markers were tested for their reproducibility and information content in a panel of 48 grape cultivars. Allelic segregation was tested in progenies derived from two controlled crosses.
conclusionA list of 38 markers with excellent quality of peaks, high power of discrimination, and uniform genome distribution (1-3 markers/chromosome), is proposed for grape genotyping. The reasons for exclusion are given for those that were discarded. The construction of marker-specific allelic ladders is also described, and their use is recommended to harmonise allelic calls and make the data obtained with different equipment and by different laboratories fully comparable.
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