Evidence map›Paper›PMID 19085128›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2009

Bacteriophage phiC31 integrase mediated transgenesis in Xenopus laevis for protein expression at endogenous levels.

Bryan G Allen, Daniel L Weeks

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Science advances · 2024
    Article
  2. bioRxiv : the preprint server for biology · 2023
    Article
  3. Review
  4. Tbx5 driveseLife · 2021
    Article
  5. Article
  6. Review
  7. Using ΦC31 integrase to mediate insertion of DNA in Xenopus embryos.Methods in molecular biology (Clifton, N.J.) · 2012
    Article
  8. Xenopus: An emerging model for studying congenital heart disease.Birth defects research. Part A, Clinical and molecular teratology · 2011
    Review
  9. Review
  10. Article
  11. Nanoparticles for retinal gene therapy.Progress in retinal and eye research · 2010
    Review
  12. Transposon transgenesis in Xenopus.Methods (San Diego, Calif.) · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Bryan G AllenDepartment of Biochemistry, University of Iowa, Iowa City, IA, USA.
Daniel L Weeks

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007337 · NIGMS · UNIVERSITY OF IOWA · PI GEYER, PAMELA K., LENTZ, STEVEN R · 1985 to 2020
$15.9M
Nkx2-5 and congenital heart defects in XenopusR01GM069944 · NIGMS · UNIVERSITY OF IOWA · PI WEEKS, DANIEL L. · 2004 to 2013
$2.4M
EYA1 In Ear Development And Branchio-Oto-Renal SyndromeR01DC007481 · NIDCD · UNIVERSITY OF IOWA · PI MANALIGOD, JOSE M · 2005 to 2009
$2.0M
NIDCD NIH HHS DC007481NIDCD NIH HHS R01 DC007481NIGMS NIH HHS GM069944NIGMS NIH HHS R01 GM069944NIGMS NIH HHS T32 GM007337
6 · The paper itself

Abstract

Bacteriophage phiC31 inserts its genome into that of its host bacterium via the integrase enzyme which catalyzes recombination between a phage attachment site (attP) and a bacterial attachment site (attB). Integrase requires no accessory factors, has a high efficiency of recombination, and does not need perfect sequence fidelity for recognition and recombination between these attachment sites. These imperfect attachment sites, or pseudo-attachment sites, are present in many organisms and have been used to insert transgenes in a variety of species. Here we describe the phiC31 integrase approach to make transgenic Xenopus laevis embryos.

Indexed as

Gene Transfer TechniquesAnimalsBacteriophagesBlotting, SouthernEmbryo, NonmammalianIntegrasesMicroinjectionsPlasmidsRNA, MessengerVirus IntegrationXenopus laevisXenopus ProteinsIntegrasesRNA, MessengerXenopus Proteins

Identifiers

PMID19085128
PMCPMC3071032

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.