Evidence map›Paper›PMID 19082576›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2009

Differential gene expression of related wheat lines with contrasting levels of head blight resistance after Fusarium graminearum inoculation.

Barbara Steiner, Harald Kurz, Marc Lemmens, Hermann Buerstmayr

Open access · hybridAbstract read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
12.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 104 citations in OpenAlex.

  1. Article
  2. Linking Multi-Omics to Wheat Resistance Types toInternational journal of molecular sciences · 2022
    Review
  3. Article
  4. Article
  5. Germplasms, genetics and genomics for better control of disastrous wheat Fusarium head blight.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Bio-protocol · 2018
    Article
  12. A multiple near isogenic line (multi-NIL) RNA-seq approach to identify candidate genes underpinning QTL.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Barbara SteinerUniversity of Natural Resources and Applied Life Sciences, Vienna, Austria.
Harald Kurz
Marc Lemmens
Hermann Buerstmayr
BOKU University · AT

Funding

Austrian Science Fund FWF P 16724
6 · The paper itself

Abstract

Fusarium head blight (FHB) is a devastating disease of wheat. Molecular mapping led to the identification of two major FHB resistance QTL, Fhb1 and Qfhs.ifa-5A. The actual function of these resistance genes is still unknown. The resistant line CM82036, the susceptible line Remus and two sister lines from the cross CM82036/Remus were analysed for gene expression. The sister lines show contrasting levels of FHB resistance due to the presence or absence of resistance alleles at Fhb1 and Qfhs.ifa-5A. At anthesis plants were challenged by Fusarium graminearum or water under controlled conditions. At six-time points after inoculation (0-72 h) gene expression of specific wheat floral tissue was analysed by cDNA-AFLPs in two biological replications. Altered expression patterns after F. graminearum inoculation were observed for 164 transcript-derived fragments (TDFs), corresponding to 3.4% of the analysed fragments. Fourteen TDFs, 0.28% of the total analysed fragments, displayed differential expression after fungal attack depending on the genotype; five of these TDFs were differentially expressed between the sister lines and are possibly associated with the possession of Fhb1 and Qfhs-ifa-5A and the FHB resistance level of the genotypes. Sequencing and annotation of these gene tags revealed homologies to a UDP-glucosyltransferase, phenylalanine ammonia-lyase, Dna-J like protein, pathogenesis-related family protein and to one gene with unknown function providing initial clues for guiding further functional studies on the resistance reaction of wheat against FHB. This work is the first report on differential gene expression between related, resistant and susceptible, wheat lines after F. graminearum attack.

Indexed as

Base SequenceComputational BiologyDNA PrimersFusariumGene Expression Regulation, PlantImmunity, InnateMolecular Sequence DataPlant DiseasesQuantitative Trait LociSequence Analysis, DNATriticumDNA Primers

Identifiers

PMID19082576
PMCPMC3194064
OpenAlexW2082463043

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.