Evidence map›Paper›PMID 19079053›Full record

ArticleNature2008

Negative feedback that improves information transmission in yeast signalling.

Richard C Yu, C Gustavo Pesce, Alejandro Colman-Lerner, Larry Lok, David Pincus, Eduard Serra, Mark Holl, Kirsten Benjamin, Andrew Gordon, Roger Brent

Abstract read
In one paragraph

Article in Nature, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 120 papers.

0numbers the graph read from it
0cells of the map it votes in
120citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

120 citing papers in PubMed.

  1. Trial
  2. Variable thresholds for phosphorylation targets of the ERK signaling pathway.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Design patterns of biological cells.BioEssays : news and reviews in molecular, cellular and developmental biology · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Mechanism of commitment to a mating partner inMolecular biology of the cell · 2022
    Article
  14. Quantifying information of intracellular signaling: progress with machine learning.Reports on progress in physics. Physical Society (Great Britain) · 2022
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Molecular switch architecture determines response properties of signaling pathways.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  20. Review

60 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Richard C YuMolecular Sciences Institute, 2168 Shattuck Avenue, Berkeley, California 94704, USA. ryu@molsci.org
C Gustavo Pesce
Alejandro Colman-Lerner
Larry Lok
David Pincus
Eduard Serra
Mark Holl
Kirsten Benjamin
Andrew Gordon
Roger Brent

Funding

SIMULATION METHODS-PREDICITNG REGULATORY SYSTEM BEHAVIORP50HG002370 · NHGRI · VTT/MSI MOLECULAR SCIENCES INSTITUTE · PI BRENT, ROGER · 2002 to 2007
$21.5M
Dynamics of gradient sensing in single cellsR01GM097479 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BRENT, ROGER · 2011 to 2014
$2.1M
NHGRI NIH HHS P50 HG002370NHGRI NIH HHS P50 HG02370NIGMS NIH HHS R01 GM097479
6 · The paper itself

Abstract

Haploid Saccharomyces cerevisiae yeast cells use a prototypic cell signalling system to transmit information about the extracellular concentration of mating pheromone secreted by potential mating partners. The ability of cells to respond distinguishably to different pheromone concentrations depends on how much information about pheromone concentration the system can transmit. Here we show that the mitogen-activated protein kinase Fus3 mediates fast-acting negative feedback that adjusts the dose response of the downstream system response to match the dose response of receptor-ligand binding. This 'dose-response alignment', defined by a linear relationship between receptor occupancy and downstream response, can improve the fidelity of information transmission by making downstream responses corresponding to different receptor occupancies more distinguishable and reducing amplification of stochastic noise during signal transmission. We also show that one target of the feedback is a previously uncharacterized signal-promoting function of the regulator of G-protein signalling protein Sst2. Our work suggests that negative feedback is a general mechanism used in signalling systems to align dose responses and thereby increase the fidelity of information transmission.

Indexed as

Signal TransductionDose-Response Relationship, DrugFeedback, PhysiologicalGTPase-Activating ProteinsMitogen-Activated Protein KinasesPheromonesProtein BindingRGS ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsFUS3 protein, S cerevisiaeGTPase-Activating ProteinsMitogen-Activated Protein KinasesPheromonesRGS ProteinsSaccharomyces cerevisiae ProteinsSST2 protein, S cerevisiae

Identifiers

PMID19079053
PMCPMC2716709

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.