Evidence map›Paper›PMID 19077918›Full record

ArticlePharmacogenetics and genomics2009

C-reactive protein genotypes and haplotypes, polymorphisms in NSAID-metabolizing enzymes, and risk of colorectal polyps.

Elizabeth M Poole, Jeannette Bigler, John Whitton, Justin G Sibert, John D Potter, Cornelia M Ulrich

Open access · greenAbstract read
In one paragraph

Article in Pharmacogenetics and genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Cyclooxygenase-2 and cancer treatment: understanding the risk should be worth the reward.Clinical cancer research : an official journal of the American Association for Cancer Research · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Elizabeth M PooleFred Hutchinson Cancer Research Center, Seattle, University of Washington, Seattle, Washington, USA.
Jeannette Bigler
John Whitton
Justin G Sibert
John D Potter
Cornelia M Ulrich
Cancer Research Center · USFred Hutch Cancer Center · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZA

Funding

Genome-Wide Association Study of Nonsynonymous SNPs in Colon CancerR01CA059045 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETERS, ULRIKE · 1994 to 2011
$11.5M
Cancer Prevention Trng-Nutrition, Exercise &GeneticsR25CA094880 · NCI · UNIVERSITY OF WASHINGTON · PI WHITE, EMILY · 2002 to 2016
$7.3M
Prostaglandin Synthesis, Genetics and Colorectal CancerR01CA114467 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ULRICH, CORNELIA M · 2006 to 2010
$2.7M
POLYMORPHISMS IN PG/COX PATHWAY AND COLORECTAL POLYPSR01CA089445 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ULRICH, CORNELIA M · 2001 to 2003
$1.2M
CANCER PREVENTION TRAINING PROGRAMT32CA009661 · NCI · UNIVERSITY OF WASHINGTON · PI WHITE, EMILY · 1991 to 2000
$233k
NCI NIH HHS R01 CA089445NCI NIH HHS R01 CA114467NCI NIH HHS R01 CA59045NCI NIH HHS R01 CA89445NCI NIH HHS R25 CA094880NCI NIH HHS T32 CA009661
6 · The paper itself

Abstract

introductionC-reactive protein (CRP) is a nonspecific marker of inflammation linked to cardiovascular disease and possibly colon cancer. Polymorphisms in CRP have been associated with differential CRP concentrations among healthy adults, with some evidence for functional effects on CRP expression.

methodsA linkage disequilibrium-based tag single nucleotide polymorphism (SNP)-selection algorithm identified six tagSNPs for Europeans (-821A>G, -390C>T/A, 90A>T, 838G>C, 2043G>A, and 4363C>A), defining six haplotypes with more than 1% frequency. In a case-control study of adenomatous (n=491) or hyperplastic (n=184) polyps versus polyp-free controls (n=583) we investigated these SNPs in relation to colorectal polyp risk.

resultsIndividuals with 838 GC or CC genotypes had a modestly, although not statistically significantly, increased risk of adenomas (odds ratio: 1.4 95% confidence interval: 0.9-2.1) and a nearly 2-fold increased risk of concurrent adenomas and hyperplastic polyps (odds ratio: 2.0 95% confidence interval: 1.1-3.6). Increased risk for concurrent adenomas and hyperplastic polyps was also observed for haplotype ACACAC. No other main associations were detected. Risk of adenomas associated with 2043G>A differed with nonsteroidal anti-inflammatory drug (NSAID) use. Among NSAID nonusers, there was a suggestion that the GA or AA genotypes were associated with decreased risk of adenomas; this was not seen among NSAID users (P interaction=0.03). We also observed interactions between UGT1A1 [TA](7) promoter repeat polymorphism and CRP tagSNPs -390C>T/A and 90A>T, in which only the homozygous variant CRP genotype was associated with increased risk of adenoma among those with the UGT1A1 6rpt/6rpt genotype (P interaction=0.02 and 0.04 for -390C>T/A and 90A>T, respectively).

conclusionThese results provide limited support for associations between genetic variation in CRP and colorectal polyp risk. The observed interactions should be evaluated further.

Indexed as

HaplotypesPolymorphism, Single NucleotideAdultAgedAnti-Inflammatory Agents, Non-SteroidalAryl Hydrocarbon HydroxylasesCase-Control StudiesColorectal NeoplasmsC-Reactive ProteinCytochrome P-450 CYP2C9FemaleGenetic VariationGenotypeGlucuronosyltransferaseHumansIntestinal PolypsAnti-Inflammatory Agents, Non-SteroidalAryl Hydrocarbon HydroxylasesC-Reactive ProteinCYP2C9 protein, humanCytochrome P-450 CYP2C9GlucuronosyltransferaseUGT1A1 Enzyme

Identifiers

PMID19077918
PMCPMC3690930
OpenAlexW1976192209

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.