Evidence map›Paper›PMID 19074260›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Ubiquitin signals autophagic degradation of cytosolic proteins and peroxisomes.

Peter Kijun Kim, Dale Warren Hailey, Robert Thomas Mullen, Jennifer Lippincott-Schwartz

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 300 papers.

0numbers the graph read from it
0cells of the map it votes in
300citing papers in PubMed
25.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

300 citing papers in PubMed, 527 citations in OpenAlex.

  1. Review
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  4. International journal of molecular sciences · 2026
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  20. AAA+ ATPase chaperone p97/VCPNature communications · 2024
    Article

240 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Peter Kijun KimCell Biology and Metabolism Program, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Dale Warren Hailey
Robert Thomas Mullen
Jennifer Lippincott-Schwartz
Eunice Kennedy Shriver National Institute of Child Health and Human Development · USUniversity of Guelph · CA

Funding

Organization and Dynamics of Endomembrane Pathways and OrganellesZIAHD001609 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI BONIFACINO, JUAN · 2009 to 2019
$16.2M
Secretory Membrane Trafficking/Sorting/CompartmentalizatZ01HD001609 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI LIPPINCOTT-SCHWARTZ, JENNIFER · 1992 to 2008
$3.1M
6 · The paper itself

Abstract

Autophagy is responsible for nonspecific, bulk degradation of cytoplasmic components. Recent work has revealed also that there is specific, autophagic degradation of polyubiquitinated protein aggregates, whose buildup occurs during neurodegenerative disease. Here, we report that simple mono-ubiquitination of normally long-lived cytoplasmic substrates is sufficient to target these substrates for autophagic degradation in mammalian cells. That is, upon their ubiquitination, both small [i.e., red fluorescent protein (RFP)] and large (i.e., peroxisomes) substrates are efficiently targeted to autophagosomes and then degraded within lysosomes upon autophagosome-lysosome fusion. This targeting requires the ubiquitin-binding protein, p62, and is blocked by the Class III phosphatidylinositol 3-kinase (PI3K) inhibitor, 3-methyladenine (3-MA), or by depletion of the autophagy-related-12 (Atg12) protein homolog. Mammalian cells thus use a common pathway involving ubiquitin and p62 for targeting diverse types of substrates for autophagy.

Indexed as

Adaptor Proteins, Signal TransducingAdenineAnimalsAutophagyAutophagy-Related Protein 12Chlorocebus aethiopsCOS CellsCytosolHeLa CellsHumansLysosomesMembrane FusionNeurodegenerative DiseasesPeroxisomesPhosphatidylinositol 3-KinasesPhosphoinositide-3 Kinase Inhibitors3-methyladenineAdaptor Proteins, Signal TransducingAdenineATG12 protein, humanAutophagy-Related Protein 12Phosphatidylinositol 3-KinasesPhosphoinositide-3 Kinase InhibitorsSequestosome-1 ProteinSmall Ubiquitin-Related Modifier ProteinsSQSTM1 protein, humanUbiquitin

Identifiers

PMID19074260
PMCPMC2602605
OpenAlexW2129321855

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.