Evidence map›Paper›PMID 19074134›Full record

ArticleThe Journal of biological chemistry2009

Combining RNA interference mutants and comparative proteomics to identify protein components and dependences in a eukaryotic flagellum.

Neil Portman, Sylvain Lacomble, Benjamin Thomas, Paul G McKean, Keith Gull

Open access · hybridAbstract readComparative Study
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Trypanin Disruption Affects the Motility and Infectivity of the ProtozoanFrontiers in cellular and infection microbiology · 2021
    Article
  6. The single flagellum ofJournal of cell science · 2020
    Article
  7. Article
  8. Article
  9. Cellular landmarks of Trypanosoma brucei and Leishmania mexicana.Molecular and biochemical parasitology · 2019
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. An overview on kinetoplastid paraflagellar rod.Journal of parasitic diseases : official organ of the Indian Society for Parasitology · 2015
    Review
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Neil PortmanSir William Dunn School of Pathology and Oxford Centre for Integrative Systems Biology, University of Oxford, South Parks Road, Oxford OX1 3RE, United Kingdom.
Sylvain Lacomble
Benjamin Thomas
Paul G McKean
Keith Gull
University of Oxford · GBLancaster University · GB

Funding

Biotechnology and Biological Sciences Research Council EGH17741Wellcome Trust
6 · The paper itself

Abstract

Eukaryotic flagella from organisms such as Trypanosoma brucei can be isolated and their protein components identified by mass spectrometry. Here we used a comparative approach utilizing two-dimensional difference gel electrophoresis and isobaric tags for relative and absolute quantitation to reveal protein components of flagellar structures via ablation by inducible RNA interference mutation. By this approach we identified 20 novel components of the paraflagellar rod (PFR). Using epitope tagging we validated a subset of these as being present within the PFR by immunofluorescence. Bioinformatic analysis of the PFR cohort reveals a likely calcium/calmodulin regulatory/signaling linkage between some components. We extended the RNA interference mutant/comparative proteomic analysis to individual novel components of our PFR proteome, showing that the approach has the power to reveal dependences between subgroups within the cohort.

Indexed as

ProteomicsRNA InterferenceAnimalsCells, CulturedChromatography, LiquidDNA, ProtozoanElectrophoresis, Gel, Two-DimensionalFlagellaFluorescent Antibody TechniqueProtozoan ProteinsRNA, ProtozoanRNA, Small InterferingSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTrypanosoma brucei bruceiDNA, ProtozoanProtozoan ProteinsRNA, ProtozoanRNA, Small Interfering

Identifiers

PMID19074134
PMCPMC2645819
OpenAlexW2164116894

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.