Evidence map›Paper›PMID 19073625›Full record

ArticleCerebral cortex (New York, N.Y. : 1991)2009

Differential expression patterns of occ1-related genes in adult monkey visual cortex.

Toru Takahata, Yusuke Komatsu, Akiya Watakabe, Tsutomu Hashikawa, Shiro Tochitani, Tetsuo Yamamori

Open access · hybridAbstract read
In one paragraph

Article in Cerebral cortex (New York, N.Y. : 1991), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. SPOCK3, a risk gene for adult ADHD and personality disorders.European archives of psychiatry and clinical neuroscience · 2014
    Article
  9. DNA methylation and methyl-binding proteins control differential gene expression in distinct cortical areas of macaque monkey.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2013
    Article
  10. Article
  11. Article
  12. Evolution of columns, modules, and domains in the neocortex of primates.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Review
  13. Comparative anatomy of marmoset and mouse cortex from genomic expression.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2012
    Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Toru TakahataDivision of Brain Biology, National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan.
Yusuke Komatsu
Akiya Watakabe
Tsutomu Hashikawa
Shiro Tochitani
Tetsuo Yamamori
National Institute for Basic Biology · JPRIKEN Center for Brain Science · JPTokushima University · JPVanderbilt University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have previously revealed that occ1 is preferentially expressed in the primary visual area (V1) of the monkey neocortex. In our attempt to identify more area-selective genes in the macaque neocortex, we found that testican-1, an occ1-related gene, and its family members also exhibit characteristic expression patterns along the visual pathway. The expression levels of testican-1 and testican-2 mRNAs as well as that of occ1 mRNA start of high in V1, progressively decrease along the ventral visual pathway, and end of low in the temporal areas. Complementary to them, the neuronal expression of SPARC mRNA is abundant in the association areas and scarce in V1. Whereas occ1, testican-1, and testican-2 mRNAs are preferentially distributed in thalamorecipient layers including "blobs," SPARC mRNA expression avoids these layers. Neither SC1 nor testican-3 mRNA expression is selective to particular areas, but SC1 mRNA is abundantly observed in blobs. The expressions of occ1, testican-1, testican-2, and SC1 mRNA were downregulated after monocular tetrodotoxin injection. These results resonate with previous works on chemical and functional gradients along the primate occipitotemporal visual pathway and raise the possibility that these gradients and functional architecture may be related to the visual activity-dependent expression of these extracellular matrix glycoproteins.

Indexed as

AnimalsCalcium-Binding ProteinsChlorocebus aethiopsExtracellular Matrix ProteinsFemaleGene ExpressionImmunohistochemistryIn Situ Hybridization, FluorescenceMacacaMaleMicroinjectionsOsteonectinProteoglycansReverse Transcriptase Polymerase Chain ReactionVisual CortexVisual PathwaysCalcium-Binding ProteinsExtracellular Matrix ProteinsOsteonectinProteoglycans

Identifiers

PMID19073625
PMCPMC2705702
OpenAlexW2159816655

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.