Evidence map›Paper›PMID 19067028›Full record

ArticleJournal of molecular evolution2009

Sulfate activation enzymes: phylogeny and association with pyrophosphatase.

Michael E Bradley, Joshua S Rest, Wen-Hsiung Li, Nancy B Schwartz

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of molecular evolution, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Structural insights into interdomain interactions inJournal of structural biology: X · 2026
    Article
  2. Article
  3. Review
  4. Unique Features ofInternational journal of molecular sciences · 2019
    Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Mitosomes in Entamoeba histolytica contain a sulfate activation pathway.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Michael E BradleyDepartment of Pediatrics, University of Chicago, 5841 South Maryland Avenue, WCH C519A, Chicago, IL, 60637, USA, mbradley@nalco.com
Joshua S Rest
Wen-Hsiung Li
Nancy B Schwartz
University of Chicago · USUniversity of Illinois Chicago · US

Funding

THE MOLECULAR BASIS OF B-MANNOSIDOSISP01HD009402 · NICHD · UNIVERSITY OF CHICAGO · PI KRAIG, RICHARD P · 1985 to 2015
$13.0M
PROTEOGLYCAN SYNTHESIS IN MUTANT MOUSE SYSTEMSR01HD017332 · NICHD · UNIVERSITY OF CHICAGO · PI SCHWARTZ, NANCY B · 1985 to 2014
$3.4M
STATISTICAL STUDIES OF DNA EVOLUTIONR37GM030998 · NIGMS · UNIVERSITY OF CHICAGO · PI LI, WEN-HSIUNG · 2000 to 2009
$1.9M
STATISTICAL STUDIES OF DNA EVOLUTIONR01GM030998 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LI, WEN-HSIUNG · 1985 to 1999
–
NICHD NIH HHS HD-009402NICHD NIH HHS HD-017332NICHD NIH HHS HD-954275NIGMS NIH HHS GM-30998
6 · The paper itself

Abstract

The enzymes catalyzing the first two reactions in the sulfate activation pathway, ATP-sulfurylase (S) and APS-kinase (K), are fused as 'KS' in animals but are fused as 'SK' in select bacteria and fungi. We have discovered a novel triple fusion protein of K, S, and pyrophosphatase (P) in several protozoan genomes within the Stramenopile lineage. These triple domain fusion proteins led us to hypothesize that pyrophosphatase enzymes and sulfate activation enzymes physically interact to impact the thermodynamics of the sulfate activation pathway. In support of this hypothesis, we demonstrate through biochemical assays that separately encoded KS and P proteins physically interact and that KS/P complexes activate more sulfate than KS alone. We also conclude on the basis of phylogenetic analyses that all known KS fusions originate from a single fusion event early in the eukaryotic lineage. Strikingly, our analyses support the same conclusion for all known SK fusions. These observations indicate that the patchwork of fused and nonfused S and K genes observed in modern-day eukaryotes and prokaryotes are the result of the two ancestral fusion genes evolving by an assortment of gene fissions, duplications, deletions, and horizontal transfers in different lineages. Our integrative use of genomics, phylogenetics, and biochemistry to characterize pyrophosphatase as a new member of the sulfate activation pathway should be effective at identifying new protein members and connections in other molecular pathways.

Indexed as

Evolution, MolecularPhylogenyPhosphotransferases (Alcohol Group Acceptor)Protein BindingProtozoan ProteinsPyrophosphatasesSulfate AdenylyltransferaseThermodynamicsadenylylsulfate kinasePhosphotransferases (Alcohol Group Acceptor)Protozoan ProteinsPyrophosphatasesSulfate Adenylyltransferase

Identifiers

PMID19067028
OpenAlexW2040452487

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.