Evidence map›Paper›PMID 19065146›Full record

ArticleMolecular psychiatry2009

Gene discovery through imaging genetics: identification of two novel genes associated with schizophrenia.

S G Potkin, J A Turner, J A Fallon, A Lakatos, D B Keator, G Guffanti, F Macciardi

Open access · greenAbstract read
In one paragraph

Article in Molecular psychiatry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 5 pooled it
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 5 syntheses or guidelines pooled it, 99 citations in OpenAlex.

  1. Pooled it
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  3. Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2018
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  15. Fast Multi-Task SCCA Learning with Feature Selection for Multi-Modal Brain Imaging Genetics.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

S G PotkinDepartment of Psychiatry and Human Behavior, Brain Imaging Center, University of California, Irvine, CA 92617, USA. sgpotkin@uci.edu
J A Turner
J A Fallon
A Lakatos
D B Keator
G Guffanti
F Macciardi
University of California, Irvine · USImaging Center · USUniversity of Milan · IT

Funding

FUNCTION BIRNU24RR021992 · NCRR · UNIVERSITY OF CALIFORNIA-IRVINE · PI POTKIN, STEVEN G · 2006 to 2010
$25.0M
AN NCRR CENTER FOR HIGH THROUGHPUT SNP GENOTYPING AND ANALYSIS: GAIN NETWORKU54RR020278 · NCRR · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY · 2004 to 2008
$14.4M
Transdisciplinary Imaging Genetics Center (RMI)P20RR020837 · NCRR · UNIVERSITY OF CALIFORNIA-IRVINE · PI POTKIN, STEVEN G · 2004 to 2006
$1.7M
NCRR NIH HHS P20 RR020837NCRR NIH HHS TIGCP20RR020837-01NCRR NIH HHS U24 RR021992NCRR NIH HHS U54 RR020278NCRR NIH HHS U54 RR020278-01
6 · The paper itself

Abstract

We have discovered two genes, RSRC1 and ARHGAP18, associated with schizophrenia and in an independent study provided additional support for this association. We have both discovered and verified the association of two genes, RSRC1 and ARHGAP18, with schizophrenia. We combined a genome-wide screening strategy with neuroimaging measures as the quantitative phenotype and identified the single nucleotide polymorphisms (SNPs) related to these genes as consistently associated with the phenotypic variation. To control for the risk of false positives, the empirical P-value for association significance was calculated using permutation testing. The quantitative phenotype was Blood-Oxygen-Level Dependent (BOLD) Contrast activation in the left dorsal lateral prefrontal cortex measured during a working memory task. The differential distribution of SNPs associated with these two genes in cases and controls was then corroborated in a larger, independent sample of patients with schizophrenia (n=82) and healthy controls (n=91), thus suggesting a putative etiological function for both genes in schizophrenia. Up until now these genes have not been linked to any neuropsychiatric illness, although both genes have a function in prenatal brain development. We introduce the use of functional magnetic resonance imaging activation as a quantitative phenotype in conjunction with genome-wide association as a gene discovery tool.

Indexed as

AdolescentAdultAgedFemaleGene FrequencyGenetic Predisposition to DiseaseGenetic TestingGenome-Wide Association StudyGenotypeGTPase-Activating ProteinsHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingMaleMiddle AgedNuclear ProteinsARHGAP18 protein, humanGTPase-Activating ProteinsNuclear ProteinsOxygenRSRC1 protein, humanTumor Suppressor Proteins

Identifiers

PMID19065146
PMCPMC3254586
OpenAlexW2026341399

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.