Evidence map›Paper›PMID 19064934›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Receptor noise limitations on chemotactic sensing.

Wouter-Jan Rappel, Herbert Levine

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Emergent eukaryotic directional sensing via receptor degradation and diffusion.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Optical control demonstrates switch-like PIP3 dynamics underlying the initiation of immune cell migration.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  7. How input fluctuations reshape the dynamics of a biological switching system.Physical review. E, Statistical, nonlinear, and soft matter physics · 2012
    Article
  8. Noise effects in nonlinear biochemical signaling.Physical review. E, Statistical, nonlinear, and soft matter physics · 2012
    Article
  9. Article
  10. Review
  11. Article
  12. How geometry and internal bias affect the accuracy of eukaryotic gradient sensing.Physical review. E, Statistical, nonlinear, and soft matter physics · 2011
    Article
  13. Microfluidic platform for chemotaxis in gradients formed by CXCL12 source-sink cells.Integrative biology : quantitative biosciences from nano to macro · 2010
    Article
  14. Article
  15. Article
  16. External and internal constraints on eukaryotic chemotaxis.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  17. Phenomenological approach to eukaryotic chemotactic efficiency.Physical review. E, Statistical, nonlinear, and soft matter physics · 2010
    Article
  18. Bayesian model predicts the response of axons to molecular gradients.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Wouter-Jan RappelDepartment of Physics and Center for Theoretical Biological Physics, University of California at San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA. rappel@physics.ucsd.edu
Herbert Levine

Funding

Project 5P01GM078586 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RAPPEL, WOUTER-JAN · 2007 to 2016
$11.2M
NIGMS NIH HHS P01 GM078586
6 · The paper itself

Abstract

Chemotactic eukaryotic cells are able to detect chemoattractant gradients that are both shallow and have a low background concentration. Under these conditions, the noise in the number of bound receptors can be significant and needs to be taken into account in determining the directional sensing process. Here, we quantify numerically the number of bound receptors on the membrane of a disk-shaped cell by using a numerical Monte Carlo tool. The obtained time traces of the receptor occupancy can be used as inputs for any directional sensing model. We investigate the response of the local excitation global inhibition model and a recently developed balanced inactivation model. We determine a measure for the motility of the cell for each model, based on the relevant output variable, as a function of experimental parameters, resulting in several experimentally testable predictions. Furthermore, we show that these two models behave in a qualitatively different fashion when the background concentration is varied. Thus, to properly characterize the sensitivity of cells to receptor occupancy, it is not sufficient to examine the input signal. Rather, one needs to take into account the response of the second messenger pathway.

Indexed as

Models, BiologicalAlgorithmsArtifactsChemotaxisComputer SimulationEukaryotic CellsMonte Carlo MethodStochastic Processes

Identifiers

PMID19064934
PMCPMC2614751

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.