Evidence map›Paper›PMID 19064913›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Efficient gene targeting in Drosophila by direct embryo injection with zinc-finger nucleases.

Kelly J Beumer, Jonathan K Trautman, Ana Bozas, Ji-Long Liu, Jared Rutter, Joseph G Gall, Dana Carroll

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 135 papers.

0numbers the graph read from it
0cells of the map it votes in
135citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

135 citing papers in PubMed, 283 citations in OpenAlex.

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  16. Approaches to Enhance Precise CRISPR/Cas9-Mediated Genome Editing.International journal of molecular sciences · 2021
    Review
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75 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Kelly J BeumerDepartment of Biochemistry, University of Utah School of Medicine, 15 North Medical Drive East, Salt Lake City, UT 84112-5650, USA.
Jonathan K Trautman
Ana Bozas
Ji-Long Liu
Jared Rutter
Joseph G Gall
Dana Carroll
University of Utah · USCarnegie Institution for Science · USUniversity of Oxford · GB

Funding

THE ORGANIZATION OF ANIMAL CELL NUCLEIR01GM033397 · NIGMS · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI GALL, JOSEPH G. · 1985 to 2019
$8.4M
Optimizing Genome Engineering with Targetable NucleasesR01GM078571 · NIGMS · UNIVERSITY OF UTAH · PI CARROLL, DANA · 2006 to 2017
$4.3M
Medical Research Council MC_U137788471NIGMS NIH HHS R01 GM033397NIGMS NIH HHS R01 GM078571NIGMS NIH HHS R01 GM33397
6 · The paper itself

Abstract

We report very high gene targeting frequencies in Drosophila by direct embryo injection of mRNAs encoding specific zinc-finger nucleases (ZFNs). Both local mutagenesis via nonhomologous end joining (NHEJ) and targeted gene replacement via homologous recombination (HR) have been achieved in up to 10% of all targets at a given locus. In embryos that are wild type for DNA repair, the products are dominated by NHEJ mutations. In recipients deficient in the NHEJ component, DNA ligase IV, the majority of products arise by HR with a coinjected donor DNA, with no loss of overall efficiency in target modification. We describe the application of the ZFN injection procedure to mutagenesis by NHEJ of 2 new genes in Drosophila melanogaster: coil and pask. Pairs of novel ZFNs designed for targets within those genes led to the production of null mutations at each locus. The injection procedure is much more rapid than earlier approaches and makes possible the generation and recovery of targeted gene alterations at essentially any locus within 2 fly generations.

Indexed as

MutagenesisAnimalsBase SequenceDNA Breaks, Double-StrandedDNA Ligase ATPDNA LigasesDrosophila melanogasterEmbryo, NonmammalianEndonucleasesGene TargetingMicroinjectionsMolecular Sequence DataMutationRecombination, GeneticRNA, MessengerZinc FingersDNA Ligase ATPDNA LigasesEndonucleasesRNA, Messenger

Identifiers

PMID19064913
PMCPMC2604940
OpenAlexW1972209711

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.