Evidence map›Paper›PMID 19064897›Full record

ArticleAntimicrobial agents and chemotherapy2009

Novel staphylococcal cassette chromosome mec type, tentatively designated type VIII, harboring class A mec and type 4 ccr gene complexes in a Canadian epidemic strain of methicillin-resistant Staphylococcus aureus.

Kunyan Zhang, Jo-Ann McClure, Sameer Elsayed, John M Conly

Abstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed.

  1. Article
  2. Antimicrobial Resistance Profiles andClinical, cosmetic and investigational dermatology · 2024
    Article
  3. Article
  4. Review
  5. Article
  6. Molecular Mechanisms of Drug Resistance inInternational journal of molecular sciences · 2022
    Review
  7. Current Status of Staphylococcal Cassette ChromosomeAntibiotics (Basel, Switzerland) · 2022
    Review
  8. Article
  9. Article
  10. Characterizing a Novel Staphylococcal Cassette ChromosomeAntimicrobial agents and chemotherapy · 2021
    Article
  11. Article
  12. Article
  13. Review
  14. Factors Contributing to the Evolution ofFrontiers in microbiology · 2018
    Review
  15. The prevalence, antibiotic resistance andAntimicrobial resistance and infection control · 2018
    Article
  16. The Changing Pattern of Population Structure ofFrontiers in microbiology · 2018
    Article
  17. Article
  18. Article
  19. Article
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Kunyan ZhangCentre for Antimicrobial Resistance, Calgary Health Region/Calgary Laboratory Services/University of Calgary, Alberta, Canada. kzhang@ucalgary.ca
Jo-Ann McClure
Sameer Elsayed
John M Conly

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Staphylococcal cassette chromosome mec (SCCmec) is a mobile genetic element characterized by flanking terminal direct and, in most cases, inverted repeat sequences, the mec and ccr gene complexes, and their surrounding DNA regions. Unique combinations of the mec and ccr gene complexes generate various SCCmec types. Six SCCmec types have been reported to date. We describe here a novel SCCmec type identified in a Canadian methicillin-resistant Staphylococcus aureus (MRSA) epidemic strain. MRSA clinical isolates were screened for known SCCmec types by multiplex and conventional PCR methods. Three phenotypically and genotypically identical MRSA clinical isolates with a pulsotype identical to CMRSA9 were identified locally and found to be nontypeable by available SCCmec typing schemes. Complete sequencing of the SCCmec element revealed a nucleotide fragment of 32,168 bp integrated at an identical chromosomal integration site (attBscc) at the 3' end of the orfX gene. The nucleotide sequences at the chromosome-SCCmec junction regions were typical of other SCCmec types, but the element harbored a unique combination of class A mec and type 4 ccr gene complexes. Sequence recombination analysis suggested that this unique SCCmec type may be derived from homologous recombination between the previously described SCC(RP62A) of S. epidermidis strain RP62A and SCC composite island of S. epidermidis ATCC 12228, respectively, or via recombination of other staphylococcal strains that carry the same or similar mobile cassettes. We identified a previously undescribed type of SCCmec from isolate C10682, tentatively designated type VIII, and we provide compelling evidence supporting the ability of SCC elements to transfer horizontally or undergo recombination to generate new SCCmec types.

Indexed as

AgedAged, 80 and overBacterial ProteinsCanadaChromosomes, BacterialFemaleHumansMaleMethicillin-Resistant Staphylococcus aureusMiddle AgedPenicillin-Binding ProteinsRecombinasesRecombination, GeneticReverse Transcriptase Polymerase Chain ReactionStaphylococcal InfectionsBacterial ProteinsCcrC protein, Staphylococcus aureusmecA protein, Staphylococcus aureusPenicillin-Binding ProteinsRecombinases

Identifiers

PMID19064897
PMCPMC2630601

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.