Evidence map›Paper›PMID 19060910›Full record

ArticleNature genetics2009

Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.

Chiara Sabatti, Susan K Service, Anna-Liisa Hartikainen, Anneli Pouta, Samuli Ripatti, Jae Brodsky, Chris G Jones, Noah A Zaitlen, Teppo Varilo, Marika Kaakinen and 15 more

Abstract read
In one paragraph

Article in Nature genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 428 papers, 12 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
428citing papers in PubMed, 12 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

428 citing papers in PubMed, 12 syntheses or guidelines pooled it.

  1. Pooled it
  2. Effect ofCardiovascular therapeutics · 2023
    Pooled it
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  5. A neurobiological pathway to smoking in adolescence: TTC12-ANKK1-DRD2 variants and reward response.European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology · 2018
    Pooled it
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  10. Imputing Phenotypes for Genome-wide Association Studies.American journal of human genetics · 2016
    Pooled it
  11. Pleiotropic genes for metabolic syndrome and inflammation.Molecular genetics and metabolism · 2014
    Pooled it
  12. Pooled it
  13. Trial
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  20. Admixture Mapping of Lipid Traits in Hispanic Americans.Journal of the American Heart Association · 2025
    Article

368 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors.

Chiara SabattiDepartment of Human Genetics and Los Angeles, Los Angeles, California 90095, USA.
Susan K Service
Anna-Liisa Hartikainen
Anneli Pouta
Samuli Ripatti
Jae Brodsky
Chris G Jones
Noah A Zaitlen
Teppo Varilo
Marika Kaakinen
Ulla Sovio
Aimo Ruokonen
Jaana Laitinen
Eveliina Jakkula
Lachlan Coin
Clive Hoggart
Andrew Collins
Hannu Turunen
Stacey Gabriel
Paul Elliot
Mark I McCarthy
Mark J Daly
Marjo-Riitta Järvelin
Nelson B Freimer
Leena Peltonen

Funding

AN NCRR CENTER FOR HIGH THROUGHPUT SNP GENOTYPING AND ANALYSIS: GAIN NETWORKU54RR020278 · NCRR · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY · 2004 to 2008
$14.4M
STATISTICAL METHODS FOR GENE MAPPINGR01GM053275 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LANGE, KENNETH L · 1995 to 2019
$9.3M
Training Grant in Genomic Analysis and InterpretationT32HG002536 · NHGRI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Valerie A Arboleda, Harold Pimentel · 2002 to 2026
$8.6M
Genetics of cardiovascular risk factors in large founder population birth controlR01HL087679 · NHLBI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI HIRSCHHORN, JOEL N · 2007 to 2009
$4.0M
Whole Genome Assoc. Analysis Strategies for Multi. PhenotypesRL1MH083268 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI FREIMER, NELSON B. · 2007 to 2011
$2.1M
NCRR NIH HHS U54 RR020278NHGRI NIH HHS T32 HG002536NHLBI NIH HHS R01 HL087679NIGMS NIH HHS GM053275-14NIGMS NIH HHS R01 GM053275NIMH NIH HHS MH083268NIMH NIH HHS RL1 MH083268Wellcome Trust 089061
6 · The paper itself

Abstract

Genome-wide association studies (GWAS) of longitudinal birth cohorts enable joint investigation of environmental and genetic influences on complex traits. We report GWAS results for nine quantitative metabolic traits (triglycerides, high-density lipoprotein, low-density lipoprotein, glucose, insulin, C-reactive protein, body mass index, and systolic and diastolic blood pressure) in the Northern Finland Birth Cohort 1966 (NFBC1966), drawn from the most genetically isolated Finnish regions. We replicate most previously reported associations for these traits and identify nine new associations, several of which highlight genes with metabolic functions: high-density lipoprotein with NR1H3 (LXRA), low-density lipoprotein with AR and FADS1-FADS2, glucose with MTNR1B, and insulin with PANK1. Two of these new associations emerged after adjustment of results for body mass index. Gene-environment interaction analyses suggested additional associations, which will require validation in larger samples. The currently identified loci, together with quantified environmental exposures, explain little of the trait variation in NFBC1966. The association observed between low-density lipoprotein and an infrequent variant in AR suggests the potential of such a cohort for identifying associations with both common, low-impact and rarer, high-impact quantitative trait loci.

Indexed as

Founder EffectGenome-Wide Association StudyQuantitative Trait, HeritableAdultBlood PressureBody Mass IndexCohort StudiesDelta-5 Fatty Acid DesaturaseFinlandGenotypeGeographyHumansLinguisticsMetabolic Networks and PathwaysParturitionPhenotypeDelta-5 Fatty Acid Desaturase

Identifiers

PMID19060910
PMCPMC2687077

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.