Evidence map›Paper›PMID 19060168›Full record

ArticleApplied and environmental microbiology2009

Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees.

Safiyh Taghavi, Craig Garafola, Sébastien Monchy, Lee Newman, Adam Hoffman, Nele Weyens, Tanja Barac, Jaco Vangronsveld, Daniel van der Lelie

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 175 papers.

0numbers the graph read from it
0cells of the map it votes in
175citing papers in PubMed
29.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

175 citing papers in PubMed, 616 citations in OpenAlex.

  1. Review
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  17. Review
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  19. Article
  20. Article

115 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Safiyh TaghaviBrookhaven National Laboratory, Biology Department, Upton, NY 11973-5000, USA.
Craig Garafola
Sébastien Monchy
Lee Newman
Adam Hoffman
Nele Weyens
Tanja Barac
Jaco Vangronsveld
Daniel van der Lelie
Brookhaven National Laboratory · USHasselt University · BESavannah River National Laboratory · USUniversity of South Carolina · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The association of endophytic bacteria with their plant hosts has a beneficial effect for many different plant species. Our goal is to identify endophytic bacteria that improve the biomass production and the carbon sequestration potential of poplar trees (Populus spp.) when grown in marginal soil and to gain an insight in the mechanisms underlying plant growth promotion. Members of the Gammaproteobacteria dominated a collection of 78 bacterial endophytes isolated from poplar and willow trees. As representatives for the dominant genera of endophytic gammaproteobacteria, we selected Enterobacter sp. strain 638, Stenotrophomonas maltophilia R551-3, Pseudomonas putida W619, and Serratia proteamaculans 568 for genome sequencing and analysis of their plant growth-promoting effects, including root development. Derivatives of these endophytes, labeled with gfp, were also used to study the colonization of their poplar hosts. In greenhouse studies, poplar cuttings (Populus deltoides x Populus nigra DN-34) inoculated with Enterobacter sp. strain 638 repeatedly showed the highest increase in biomass production compared to cuttings of noninoculated control plants. Sequence data combined with the analysis of their metabolic properties resulted in the identification of many putative mechanisms, including carbon source utilization, that help these endophytes to thrive within a plant environment and to potentially affect the growth and development of their plant hosts. Understanding the interactions between endophytic bacteria and their host plants should ultimately result in the design of strategies for improved poplar biomass production on marginal soils as a feedstock for biofuels.

Indexed as

Bacterial Physiological PhenomenaSymbiosisBacteriaBiomassDNA, BacterialDNA, RibosomalGenes, rRNAGenome, BacterialMolecular Sequence DataPhylogenyPopulusRNA, BacterialRNA, Ribosomal, 16SSequence Analysis, DNASequence Homology, Nucleic AcidDNA, BacterialDNA, RibosomalRNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID19060168
PMCPMC2632133
OpenAlexW2160716612

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.