Evidence map›Paper›PMID 19060157›Full record

ArticleApplied and environmental microbiology2009

b-type dihydroorotate dehydrogenase is purified as a H2O2-forming NADH oxidase from Bifidobacterium bifidum.

Shinji Kawasaki, Takumi Satoh, Mitsunori Todoroki, Youichi Niimura

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
  2. Oxidative Stress Response of Probiotic StrainFoods (Basel, Switzerland) · 2023
    Article
  3. Article
  4. The Role of Hydrogen-Peroxide (HAntioxidants (Basel, Switzerland) · 2023
    Review
  5. Article
  6. Article
  7. Stress Response in Bifidobacteria.Microbiology and molecular biology reviews : MMBR · 2022
    Review
  8. Genome-Wide Assessment of Stress-Associated Genes in Bifidobacteria.Applied and environmental microbiology · 2022
    Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. OScientific reports · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Biosynthesis and degradation of H2O2 by vaginal lactobacilli.Applied and environmental microbiology · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Shinji KawasakiDepartment of Bioscience, Tokyo University of Agriculture, Setagaya-ku, Tokyo, Japan. kawashin@nodai.ac.jp
Takumi Satoh
Mitsunori Todoroki
Youichi Niimura
Tokyo University of Agriculture · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Our previous report showed the existence of microaerophilic Bifidobacterium species that can grow well under aerobic conditions rather than anoxic conditions in a liquid shaking culture. The difference in the aerobic growth properties between the O(2)-sensitive and microaerophilic species is due to the existence of a system to produce H(2)O(2) in the growth medium. In this study, we purified and characterized the NADH oxidase that is considered to be a key enzyme in the production of H(2)O(2). Bifidobacterium bifidum, an O(2)-sensitive bacterium and the type species of the genus Bifidobacterium, possessed one dominant active fraction of NADH oxidase and a minor active fraction of NAD(P)H oxidase activity detected in the first step of column chromatography for purification of the enzyme. The dominant active fraction was further purified and determined from its N-terminal sequence to be a homologue of b-type dihydroorotate dehydrogenase (DHOD), composed of PyrK (31 kDa) and PyrDb (34 kDa) subunits. The genes that encode PyrK and PryDb are tandemly located within an operon structure. The purified enzyme was found to be a heterotetramer showing the typical spectrum of a flavoprotein, and flavin mononucleotide and flavin adenine dinucleotide were identified as cofactors. The purified enzyme was characterized as the enzyme that catalyzes the DHOD reaction and also catalyzes a H(2)O(2)-forming NADH oxidase reaction in the presence of O(2). The kinetic parameters suggested that the enzyme could be involved in H(2)O(2) production in highly aerated environments.

Indexed as

Bacterial ProteinsBifidobacteriumChromatography, LiquidCoenzymesDihydroorotate DehydrogenaseDNA, BacterialFlavin-Adenine DinucleotideFlavin MononucleotideHydrogen PeroxideMolecular Sequence DataMolecular WeightMultienzyme ComplexesNADNADH, NADPH OxidoreductasesNADPOperonBacterial ProteinsCoenzymesDihydroorotate DehydrogenaseDNA, BacterialFlavin-Adenine DinucleotideFlavin MononucleotideHydrogen PeroxideMultienzyme ComplexesNADNADH, NADPH OxidoreductasesNADH oxidaseNADPOxidoreductases Acting on CH-CH Group DonorsProtein Subunits

Identifiers

PMID19060157
PMCPMC2632149
OpenAlexW2128038472

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.