Evidence map›Paper›PMID 19059499›Full record

ArticleDNA repair2009

Chromatin restoration following nucleotide excision repair involves the incorporation of ubiquitinated H2A at damaged genomic sites.

Qianzheng Zhu, Gulzar Wani, Hany H Arab, Mohamed A El-Mahdy, Alo Ray, Altaf A Wani

Open access · greenAbstract read
In one paragraph

Article in DNA repair, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Epigenetic Regulation of Nucleotide Excision Repair.Frontiers in cell and developmental biology · 2022
    Review
  6. Review
  7. Xeroderma Pigmentosum: A Model for Human Premature Aging.The Journal of investigative dermatology · 2021
    Review
  8. Article
  9. Article
  10. Overexpression of chromatin assembly factor-1/p60 predicts biological behaviour of laryngeal carcinomas.Acta otorhinolaryngologica Italica : organo ufficiale della Societa italiana di otorinolaringologia e chirurgia cervico-facciale · 2017
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. A human XPC protein interactome--a resource.International journal of molecular sciences · 2013
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Qianzheng ZhuDepartment of Radiology, The Ohio State University, Columbus, OH 43210, USA. zhu.49@osu.edu
Gulzar Wani
Hany H Arab
Mohamed A El-Mahdy
Alo Ray
Altaf A Wani
The Ohio State University · USThe Ohio State University Comprehensive Cancer Center – Arthur G. James Cancer Hospital and Richard J. Solove Research Institute · US

Funding

Cross-talking pre-incision events of eukaryotic NERR01ES012991 · NIEHS · OHIO STATE UNIVERSITY · PI WANI, ALTAF A, ZHU, QIANZHENG · 2004 to 2020
$6.2M
DNA DAMAGE RESPONSES FOLLOWING GENOTOXIN EXPOSURER01ES002388 · NIEHS · OHIO STATE UNIVERSITY · PI WANI, ALTAF A · 1985 to 2016
$4.9M
Repair of Genotoxic Damage in ChromatinR01CA093413 · NCI · OHIO STATE UNIVERSITY · PI WANI, ALTAF A · 2002 to 2011
$3.0M
NCI NIH HHS CA93413NCI NIH HHS R01 CA093413NIEHS NIH HHS ES12991NIEHS NIH HHS ES2388NIEHS NIH HHS R01 ES002388NIEHS NIH HHS R01 ES012991
6 · The paper itself

Abstract

Restoration of functionally intact chromatin structure following DNA damage processing is crucial for maintaining genetic and epigenetic information in human cells. Here, we show the UV-induced uH2A foci formation in cells lacking XPC, DDB2, CSA or CSB, but not in cells lacking XPA, XPG or XPF indicating that uH2A incorporation relied on successful damage repair occurring through either GGR or TCR sub-pathway. In contrast, XPA, XPG or XPF were not required for formation of gammaH2AX foci in asynchronous cells. Notably, the H2A ubiquitin ligase Ring1B, a component of Polycomb repressor complex 1, did not localize at DNA damage sites. However, histone chaperone CAF-1 showed distinct localization to the damage sites. Knockdown of CAF-1 p60 abolished CAF-1 as well as uH2A foci formation. CAF-1 p150 was found to associate with NER factors TFIIH, RPA p70 and PCNA in chromatin. These data demonstrate that successful NER of genomic lesions and prompt CAF-1-mediated chromatin restoration link uH2A incorporation at the sites of damage repair within chromatin.

Indexed as

DNA DamageDNA RepairUbiquitinationCell Cycle ProteinsChromatinChromatin Assembly Factor-1Chromosomal Proteins, Non-HistoneDNA-Binding ProteinsGenome, HumanHeLa CellsHistonesHumansPolycomb Repressive Complex 1Proliferating Cell Nuclear AntigenProteasome Endopeptidase ComplexProtein BindingCell Cycle ProteinsCHAF1B protein, humanChromatinChromatin Assembly Factor-1Chromosomal Proteins, Non-HistoneCNOT8 protein, humanDDB2 protein, humanDNA-Binding ProteinsH2AX protein, humanHistonesPolycomb Repressive Complex 1PRC1 protein, humanProliferating Cell Nuclear AntigenProteasome Endopeptidase ComplexReplication Protein ARNF2 protein, humanTranscription FactorsUbiquitin-Protein LigasesUbiquitins

Identifiers

PMID19059499
PMCPMC2718537
OpenAlexW2091931159

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.