Evidence map›Paper›PMID 19059393›Full record

ArticleDevelopmental biology2009

Temporal regulation of Ath5 gene expression during eye development.

Minde I Willardsen, Arminda Suli, Yi Pan, Nicholas Marsh-Armstrong, Chi-Bin Chien, Heithem El-Hodiri, Nadean L Brown, Kathryn B Moore, Monica L Vetter

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. TheProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Distinct effects of Hedgehog signaling on neuronal fate specification and cell cycle progression in the embryonic mouse retina.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2009
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Minde I WillardsenDepartment of Neurobiology and Anatomy, University of Utah School of Medicine, Salt Lake City, UT 84132, USA.
Arminda Suli
Yi Pan
Nicholas Marsh-Armstrong
Chi-Bin Chien
Heithem El-Hodiri
Nadean L Brown
Kathryn B Moore
Monica L Vetter
University of Utah · USNationwide Children's Hospital · USCincinnati Children's Hospital Medical Center · USKennedy Krieger Institute · US

Funding

REGULATION OF RETINAL NEUROGENESIS BY XATH5R01EY012274 · NEI · UNIVERSITY OF UTAH · PI VETTER, MONICA L · 1998 to 2021
$7.2M
INVESTIGATION OF MAMMALIAN RETINAL NEURON DEVELOPMENTR01EY013612 · NEI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BROWN, NADEAN L · 2001 to 2020
$6.0M
RETINAL AXON PATHFINDING MUTANTS IN ZEBRAFISHR01EY012873 · NEI · UNIVERSITY OF UTAH · PI VETTER, MONICA L · 2000 to 2011
$4.0M
The Role of Rx in Retinal Progenitor Cell DevelopmentR01EY015480 · NEI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI EL-HODIRI, HEITHEM M · 2004 to 2015
$3.7M
Thyroid hormone &metamorphic ipsilateral projectionR01EY016097 · NEI · HUGO W. MOSER RES INST KENNEDY KRIEGER · PI MARSH-ARMSTRONG, NICHOLAS R · 2005 to 2008
$1.5M
NEI NIH HHS EY12274NEI NIH HHS EY12873NEI NIH HHS EY13612NEI NIH HHS EY15480NEI NIH HHS EY179932NEI NIH HHS R01 EY012274NEI NIH HHS R01 EY012873NEI NIH HHS R01 EY013612NEI NIH HHS R01 EY015480NEI NIH HHS R01 EY016097NEI NIH HHS R01EY016097
6 · The paper itself

Abstract

During central nervous system development the timing of progenitor differentiation must be precisely controlled to generate the proper number and complement of neuronal cell types. Proneural basic helix-loop-helix (bHLH) transcription factors play a central role in regulating neurogenesis, and thus the timing of their expression must be regulated to ensure that they act at the appropriate developmental time. In the developing retina, the expression of the bHLH factor Ath5 is controlled by multiple signals in early retinal progenitors, although less is known about how these signals are coordinated to ensure correct spatial and temporal pattern of gene expression. Here we identify a key distal Xath5 enhancer and show that this enhancer regulates the early phase of Xath5 expression, while the proximal enhancer we previously identified acts later. The distal enhancer responds to Pax6, a key patterning factor in the optic vesicle, while FGF signaling regulates Xath5 expression through sequences outside of this region. In addition, we have identified an inhibitory element adjacent to the conserved distal enhancer region that is required to prevent premature initiation of expression in the retina. This temporal regulation of Xath5 gene expression is comparable to proneural gene regulation in Drosophila, whereby separate enhancers regulate different temporal phases of expression.

Indexed as

Basic Helix-Loop-Helix ProteinsEye ProteinsGene Expression Regulation, DevelopmentalXenopus laevisXenopus ProteinsAnimalsAnimals, Genetically ModifiedBase SequenceEnhancer Elements, GeneticEyeFibroblast Growth FactorsHomeodomain ProteinsMolecular Sequence DataMorphogenesisPaired Box Transcription FactorsPAX6 Transcription FactorATOH7 protein, XenopusBasic Helix-Loop-Helix ProteinsEye ProteinsFibroblast Growth FactorsHomeodomain ProteinsPaired Box Transcription FactorsPAX6 Transcription FactorRepressor ProteinsXenopus Proteins

Identifiers

PMID19059393
PMCPMC2788623
OpenAlexW2035293839

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.