Evidence map›Paper›PMID 19059368›Full record

ArticleBiochimica et biophysica acta2009

TGF-beta1 modulates focal adhesion kinase expression in rat intestinal epithelial IEC-6 cells via stimulatory and inhibitory Smad binding elements.

Mary F Walsh, Dinakar R Ampasala, Arun K Rishi, Marc D Basson

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Loss of MLK3 signaling impedes ulcer healing by modulating MAPK signaling in mouse intestinal mucosa.American journal of physiology. Gastrointestinal and liver physiology · 2012
    Article
  5. Article
  6. Article
  7. Effects and mechanism of irbesartan on tubulointerstitial fibrosis in 5/6 nephrectomized rats.Journal of Huazhong University of Science and Technology. Medical sciences = Hua zhong ke ji da xue xue bao. Yi xue Ying De wen ban = Huazhong keji daxue xuebao. Yixue Yingdewen ban · 2010
    Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Mary F WalshDepartment of Surgery, Wayne State University, Detroit 48201-1932, USA.
Dinakar R Ampasala
Arun K Rishi
Marc D Basson
John D. Dingell VA Medical Center · USThe Barbara Ann Karmanos Cancer Institute · USWayne State University · US

Funding

Regulation of FAK protein in mucosal healingR01DK067257 · NIDDK · WAYNE STATE UNIVERSITY · PI BASSON, MARC D. · 2005 to 2009
$1.2M
NIDDK NIH HHS R01 DK067257NIDDK NIH HHS R01DK067257
6 · The paper itself

Abstract

TGF-beta and FAK modulate cell migration, differentiation, proliferation and apoptosis, and TGF-beta promotes FAK transcription in intestinal epithelial cells via Smad-dependent and independent pathways. We utilized a 1320 bp FAK promoter-luciferase construct to characterize basal and TGF-beta-mediated FAK gene transcription in IEC-6 cells. Inhibiting JNK or Akt negated TGF-beta-stimulated promoter activity; ERK inhibition did not block the TGF-beta effect but increased basal activity. Co-transfection with Co-Smad4 enhanced the TGF-beta response while the inhibitory Smad7 abolished it. Serial deletions sequentially removing the four Smad binding elements (SBE) in the 5' untranslated region of the promoter revealed that the two most distal SBE's are positive regulators while SBE3 exerts a negative influence. Mutational deletion of two upstream p53 sites enhanced basal but did not affect TGF-beta-stimulated increases in promoter activity. TGF-beta increased DNA binding of Smad4, phospho-Smad2/3 and Runx1/AML1a to the most distal 435 bp containing 3 SBE and 2 AML1a sites by ChIP assay. However, although point mutation of SBE1 ablated the TGF-beta-mediated rise in SV40-promoter activity, mutation of AML1a sites did not. TGF-beta regulation of FAK transcription reflects a complex interplay between positive and negative non-Smad signals and SBE's, the last independent of p53 or AML1a.

Indexed as

5' Untranslated RegionsAnimalsBlotting, WesternCell LineChromatin ImmunoprecipitationEpithelial CellsFocal Adhesion Protein-Tyrosine KinasesGene Expression Regulation, EnzymologicIntestinesMutagenesis, Site-DirectedPromoter Regions, GeneticRatsSmad4 ProteinSmad7 ProteinSmad ProteinsTransforming Growth Factor beta15' Untranslated RegionsFocal Adhesion Protein-Tyrosine KinasesSmad4 ProteinSmad7 ProteinSmad ProteinsTransforming Growth Factor beta1

Identifiers

PMID19059368
PMCPMC2730956
OpenAlexW2083007944

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.