Evidence map›Paper›PMID 19057663›Full record

ArticlePLoS pathogens2008

APOBEC3G inhibits elongation of HIV-1 reverse transcripts.

Kate N Bishop, Mohit Verma, Eun-Young Kim, Steven M Wolinsky, Michael H Malim

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 220 papers.

0numbers the graph read from it
0cells of the map it votes in
220citing papers in PubMed
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

220 citing papers in PubMed, 325 citations in OpenAlex.

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  12. Structural insights into PPP2R5A degradation by HIV-1 Vif.Nature structural & molecular biology · 2024
    Article
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160 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Kate N BishopDepartment of Infectious Diseases, King's College London School of Medicine, Guy's Hospital, London, United Kingdom.
Mohit Verma
Eun-Young Kim
Steven M Wolinsky
Michael H Malim
King's College London · GBNorthwestern University · US

Funding

The APOBEC/Vif Conflict and HIV PathogenesisR01AI070072 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI WOLINSKY, STEVEN M · 2007 to 2011
$2.6M
Medical Research Council G0401570NIAID NIH HHS AI070072NIAID NIH HHS R01 AI070072
6 · The paper itself

Abstract

APOBEC3G (A3G) is a host cytidine deaminase that, in the absence of Vif, restricts HIV-1 replication and reduces the amount of viral DNA that accumulates in cells. Initial studies determined that A3G induces extensive mutation of nascent HIV-1 cDNA during reverse transcription. It has been proposed that this triggers the degradation of the viral DNA, but there is now mounting evidence that this mechanism may not be correct. Here, we use a natural endogenous reverse transcriptase assay to show that, in cell-free virus particles, A3G is able to inhibit HIV-1 cDNA accumulation not only in the absence of hypermutation but also without the apparent need for any target cell factors. We find that although reverse transcription initiates in the presence of A3G, elongation of the cDNA product is impeded. These data support the model that A3G reduces HIV-1 cDNA levels by inhibiting synthesis rather than by inducing degradation.

Indexed as

Reverse TranscriptionAPOBEC-3G DeaminaseCell LineCytidine DeaminaseDNA, ComplementaryDNA, ViralHIV-1HIV Reverse TranscriptaseHumansMutationPolymerase Chain Reactionvif Gene Products, Human Immunodeficiency VirusVirus ReplicationAPOBEC-3G DeaminaseAPOBEC3G protein, humanCytidine DeaminaseDNA, ComplementaryDNA, ViralHIV Reverse Transcriptasereverse transcriptase, Human immunodeficiency virus 1vif Gene Products, Human Immunodeficiency Virusvif protein, Human immunodeficiency virus 1

Identifiers

PMID19057663
PMCPMC2584787
OpenAlexW2084938297

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.