Evidence map›Paper›PMID 19057464›Full record

ArticlePharmacogenetics and genomics2009

Pharmacogenetic association of the APOA1/C3/A4/A5 gene cluster and lipid responses to fenofibrate: the genetics of lipid-lowering drugs and diet network study.

Yongjun Liu, Jose M Ordovas, Guimin Gao, Michael Province, Robert J Straka, Michael Y Tsai, Chao-Qiang Lai, Kui Zhang, Ingrid Borecki, James E Hixson and 2 more

Open access · greenAbstract read
In one paragraph

Article in Pharmacogenetics and genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

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  16. A sleep apneic's gene: perspectives for development of diabetes.Polish archives of internal medicine · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 2 countries.

Yongjun LiuDepartments of Epidemiology, School of Public Health, University of Alabama at Birmingham, Birmingham, Alabama, USA.
Jose M Ordovas
Guimin Gao
Michael Province
Robert J Straka
Michael Y Tsai
Chao-Qiang Lai
Kui Zhang
Ingrid Borecki
James E Hixson
David B Allison
Donna K Arnett
University of Alabama at Birmingham · USWashington University in St. Louis · USJean Mayer Human Nutrition Research Center on Aging · USLaboratory of Molecular Genetics · PLThe University of Texas Health Science Center at Houston · USTufts University · USUniversity of Minnesota · US

Funding

Why is the prevalence of obesity so high in U.S. Southern States? Regional predictors of BMI and obesity treatment response.P30DK056336 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI James O Hill · 2000 to 2026
$31.9M
Genetic and Environmental Determinants of TriglyceridesU01HL072524 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI ARNETT, DONNA K · 2002 to 2008
$11.9M
Haplotyping and QTL Mapping in Pedigrees with Missing DataR01GM073766 · NIGMS · VIRGINIA COMMONWEALTH UNIVERSITY · PI GAO, GUIMIN · 2007 to 2011
$1.3M
Haplotype Analysis in Linkage Disequilibrium MappingR01GM074913 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI ZHANG, KUI · 2006 to 2010
$1.1M
NHLBI NIH HHS U01 HL72524NIDDK NIH HHS 3P30DK056336NIDDK NIH HHS P30 DK056336NIGMS NIH HHS R01 GM073766NIGMS NIH HHS R01GM073766NIGMS NIH HHS R01 GM074913
6 · The paper itself

Abstract

backgroundThe apolipoproteins (APOA1/C3/A4/A5) are key components in modulating lipoprotein metabolism. It is unknown whether variants at the APOA1/C3/A4/A5 gene cluster are associated with lipid response to pharmacologic intervention. METHODS AND

resultsPlasma triglycerides (TGs) and high-density lipoprotein (HDL) levels were measured in 861 Genetics of Lipid-Lowering Drugs and Diet Network study participants who underwent a 3-week fenofibrate trial. We examined 18 common single nucleotide polymorphisms (SNPs) spanning the APOA1/C3/A4/A5 genes to investigate the effects of variants at the gene cluster on lipid response to fenofibrate treatment. We found that the minor alleles of the SNPs rs3135506 (APOA5_S19W), rs5104 (APOA4_N147S), rs4520 (APOC3_G34G), and rs5128 (APOC3_3U386) were associated with enhanced TG response to fenofibrate treatment (P= 0.0004-0.018). The minor allele of SNP rs2854117 (APOC3_M482) was associated with reduced rather than enhanced TG response (P= 0.026). The SNP rs3135506 (APOA5_S19W) was associated with HDL response, with minor allele related to reduced HDL response to fenofibrate (P= 0.002). Association analyses on haplotype provided corroborative evidence to single SNP association analyses. The common haplotypes H2, H3, and H5 were significantly associated with reduced TG response to fenofibrate.

conclusionThe genetic variants at APOA1/C3/A4/A5 gene cluster may be useful markers to predict response of lipid-lowering therapy with fenofibrate. Further studies to replicate/confirm our findings are warranted.

Indexed as

AdultApolipoprotein A-IApolipoprotein A-VApolipoprotein C-IIIApolipoproteinsApolipoproteins ADietFemaleFenofibrateGenetic VariationGenotypeHaplotypesHumansHypertriglyceridemiaHypolipidemic AgentsLinkage DisequilibriumAPOA1 protein, humanAPOA5 protein, humanApolipoprotein A-Iapolipoprotein A-IVApolipoprotein A-VApolipoprotein C-IIIApolipoproteinsApolipoproteins AFenofibrateHypolipidemic Agents

Identifiers

PMID19057464
PMCPMC2733171
OpenAlexW2032379578

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.