Evidence map›Paper›PMID 19056759›Full record

ArticleAmerican journal of physiology. Gastrointestinal and liver physiology2009

Sodium channel mutation in irritable bowel syndrome: evidence for an ion channelopathy.

Yuri A Saito, Peter R Strege, David J Tester, G Richard Locke, Nicholas J Talley, Cheryl E Bernard, James L Rae, Jonathan C Makielski, Michael J Ackerman, Gianrico Farrugia

Abstract read
In one paragraph

Article in American journal of physiology. Gastrointestinal and liver physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed, 2 pooled it
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 2 syntheses or guidelines pooled it, 133 citations in OpenAlex.

  1. The SCN5A Gene Is a Predictor of Phenotype Severity in Brugada Syndrome: A Comprehensive Literature Review.Medical principles and practice : international journal of the Kuwait University, Health Science Centre · 2023
    Pooled it
  2. Guideline
  3. Late IMedicinal research reviews · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Review
  10. Article
  11. Article
  12. Article
  13. Capsaicin as an amphipathic modulator of NaChannels (Austin, Tex.) · 2022
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Structural basis of cytoplasmic NaV1.5 and NaV1.4 regulation.The Journal of general physiology · 2021
    Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Yuri A SaitoEnteric Neuroscience Program, Miles and Shirley Fiterman Center for Digestive Disease, Mayo Clinic, Rochester, MN 55905, USA.
Peter R Strege
David J Tester
G Richard Locke
Nicholas J Talley
Cheryl E Bernard
James L Rae
Jonathan C Makielski
Michael J Ackerman
Gianrico Farrugia
Mayo Clinic in Arizona · USUniversity of Wisconsin–Madison · US

Funding

MECHANOTRANSDUCTION IN INTESTINAL SMOOTH MUSCLE CELLSR01DK052766 · NIDDK · MAYO CLINIC ROCHESTER · PI BEYDER, ARTHUR, FARRUGIA, GIANRICO · 1997 to 2025
$8.3M
CALCIUM DYNAMICS IN INTERSTITIAL CELLS OF CAJALR01DK057061 · NIDDK · MAYO CLINIC ROCHESTER · PI GIANRICO FARRUGIA, Tamas Ordog · 2000 to 2026
$8.2M
Antidepressant Therapy for Functional DyspepsiaU01DK065713 · NIDDK · MAYO CLINIC ROCHESTER · PI LOCKE, GILES RICHARD · 2005 to 2011
$5.0M
Cellular &Clinical Phenotypes of Novel SCN5a MutationsR01HL071092 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI MAKIELSKI, JONATHAN C · 2003 to 2011
$3.1M
Genetic epidemiology of irritable bowel syndrome (IBS)K23DK066271 · NIDDK · MAYO CLINIC ROCHESTER · PI SAITO LOFTUS, YURI ANN · 2004 to 2008
$630k
NHLBI NIH HHS R01-HL-71092NIDDK NIH HHS DK-066271NIDDK NIH HHS DK-52766NIDDK NIH HHS DK-57061NIDDK NIH HHS U01-DK-65713
6 · The paper itself

Abstract

The SCN5A-encoded Na(v)1.5 Na(+) channel is expressed in interstitial cells of Cajal and smooth muscle in the circular layer of the human intestine. Patients with mutations in SCN5A are more likely to report gastrointestinal symptoms, especially abdominal pain. Twin and family studies of irritable bowel syndrome (IBS) suggest a genetic basis for IBS, but no genes have been identified to date. Therefore, our aims were to evaluate SCN5A as a candidate gene involved in the pathogenesis of IBS and to determine physiological consequences of identified mutations. Mutational analysis was performed on genomic DNA obtained from 49 subjects diagnosed with IBS who reported at least moderately severe abdominal pain. One patient hosted a loss-of-function missense mutation, G298S, that was not observed in >3,000 reference alleles derived from 1,500 healthy control subjects. Na(+) currents were recorded from the four common human SCN5A transcripts in transfected HEK-293 cells. Comparing Na(v)1.5 with G298S-SCN5A versus wild type in HEK cells, Na(+) current density was significantly less by 49-77%, and channel activation time was delayed in backgrounds that also contained the common H558R polymorphism. Single-channel measurements showed no change in Na(v)1.5 conductance. Mechanosensitivity was reduced in the H558/Q1077del transcript but not in the other three backgrounds. In conclusion, the G298S-SCN5A missense mutation caused a marked reduction of whole cell Na(+) current and loss of function of Na(v)1.5, suggesting SCN5A as a candidate gene in the pathophysiology of IBS.

Indexed as

Mutation, MissensePolymorphism, GeneticAdolescentAdultCase-Control StudiesCell LineEpithelial CellsFemaleGene FrequencyGenetic Predisposition to DiseaseHumansIrritable Bowel SyndromeKineticsMaleMechanotransduction, CellularMembrane PotentialsMuscle ProteinsNAV1.5 Voltage-Gated Sodium ChannelSCN5A protein, humanSodium Channels

Identifiers

PMID19056759
PMCPMC2643921
OpenAlexW2168740798

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.