ArticleBMC genomics2008
SNUGB: a versatile genome browser supporting comparative and functional fungal genomics.
Article in BMC genomics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- Characterization of the effects of terminators and introns on recombinant gene expression in the basidiomycete Ceriporiopsis subvermispora.Journal of microbiology (Seoul, Korea) · 2020Article
- Systematic functional analysis of kinases in the fungal pathogen Cryptococcus neoformans.Nature communications · 2016Article
- Genome Sequences of Three Phytopathogenic Species of the Magnaporthaceae Family of Fungi.G3 (Bethesda, Md.) · 2015Article
- Systematic functional profiling of transcription factor networks in Cryptococcus neoformans.Nature communications · 2015Article
- CFGP 2.0: a versatile web-based platform for supporting comparative and evolutionary genomics of fungi and Oomycetes.Nucleic acids research · 2013Article
- Systematic and searchable classification of cytochrome P450 proteins encoded by fungal and oomycete genomes.BMC genomics · 2012Article
- Comparative genomics allowed the identification of drug targets against human fungal pathogens.BMC genomics · 2011Article
- Cyber infrastructure for Fusarium: three integrated platforms supporting strain identification, phylogenetics, comparative genomics and knowledge sharing.Nucleic acids research · 2011Article
- Fungal secretome database: integrated platform for annotation of fungal secretomes.BMC genomics · 2010Article
- IMGD: an integrated platform supporting comparative genomics and phylogenetics of insect mitochondrial genomes.BMC genomics · 2009Article
Corrections and comments
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundSince the full genome sequences of Saccharomyces cerevisiae were released in 1996, genome sequences of over 90 fungal species have become publicly available. The heterogeneous formats of genome sequences archived in different sequencing centers hampered the integration of the data for efficient and comprehensive comparative analyses. The Comparative Fungal Genomics Platform (CFGP) was developed to archive these data via a single standardized format that can support multifaceted and integrated analyses of the data. To facilitate efficient data visualization and utilization within and across species based on the architecture of CFGP and associated databases, a new genome browser was needed.
resultsThe Seoul National University Genome Browser (SNUGB) integrates various types of genomic information derived from 98 fungal/oomycete (137 datasets) and 34 plant and animal (38 datasets) species, graphically presents germane features and properties of each genome, and supports comparison between genomes. The SNUGB provides three different forms of the data presentation interface, including diagram, table, and text, and six different display options to support visualization and utilization of the stored information. Information for individual species can be quickly accessed via a new tool named the taxonomy browser. In addition, SNUGB offers four useful data annotation/analysis functions, including 'BLAST annotation.' The modular design of SNUGB makes its adoption to support other comparative genomic platforms easy and facilitates continuous expansion.
conclusionThe SNUGB serves as a powerful platform supporting comparative and functional genomics within the fungal kingdom and also across other kingdoms. All data and functions are available at the web site http://genomebrowser.snu.ac.kr/.
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