Evidence map›Paper›PMID 19052667›Full record

ArticleBioinformation2008

Molecular epigenetics, chromatin, and NeuroAIDS/HIV: translational implications.

Paul Shapshak, Francesco Chiappelli, Deborah Commins, Elyse Singer, Andrew J Levine, Charurut Somboonwit, Alireza Minagar, Andras J Pellionisz

Open access · hybridAbstract read
In one paragraph

Article in Bioinformation, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. The effects of cocaine on HIV transcription.Journal of neurovirology · 2016
    Review
  3. Review
  4. Editorial neuroAIDS review.AIDS (London, England) · 2011
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 7 institutions in 1 country.

Paul ShapshakDivision of Infectious Diseases and International Medicine, Departments of Internal Medicine and of Psychiatry and Behavioral Medicine, University of South Florida Health, Tampa, FL 33606, USA. pshapshak@gmail.com
Francesco Chiappelli
Deborah Commins
Elyse Singer
Andrew J Levine
Charurut Somboonwit
Alireza Minagar
Andras J Pellionisz
Neurological Surgery · USDouble Helix (United States) · USFlorida College · USLouisiana State University Health Sciences Center Shreveport · USUniversity of California, Los Angeles · USUniversity of Southern California · USUniversity of South Florida · US

Funding

Women's CancersP30CA016042 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Samuel Wheeler French · 1985 to 2026
$134.5M
NATIONAL NEUROLOGICAL AIDS BANKU24MH100929 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SINGER, ELYSE J · 2013 to 2023
$12.5M
National Neurological AIDS Bank (NNAB)R24NS038841 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SINGER, ELYSE J · 1998 to 2007
$12.0M
COMMUNITY DEPOSIT AND REVIEW OF BIOCHEMICAL DATABASESR01GM056529 · NIGMS · WASHINGTON UNIVERSITY · PI KAZIC, TONI · 1997 to 2006
$2.4M
CLINICAL AND FUNDAMENTAL IMMUNOLOGYT32AI007126 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SAXON, ANDREW · 1985 to 2006
$1.5M
HIV INFECTION POTENTIAL /IDU-RELATED INJECTION MATERIALSR01DA012580 · NIDA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI PAGE, JOHN BRYAN · 2000 to 2002
$1.2M
GENE EXPRESSION IN HIV ASSOCIATED DEMENTIA BRAINR21DA014533 · NIDA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI SHAPSHAK, PAUL · 2001 to 2004
$795k
NCI NIH HHS P30 CA016042NIAID NIH HHS T32 AI007126NIDA NIH HHS R01 DA012580NIDA NIH HHS R21 DA014533NIGMS NIH HHS R01 GM056529NIMH NIH HHS U24 MH100929NINDS NIH HHS R24 NS038841
6 · The paper itself

Abstract

We describe current research that applies epigenetics to a novel understanding of the immuno-neuropathogenesis of HIV-1 viral infection and NeuroAIDS. We propose the hypothesis that HIV-1 alters the structure-function relationship of chromatin, coding DNA and non-coding DNA, including RNA transcribed from these regions resulting in pathogenesis in AIDS, drug abuse, and NeuroAIDS. We discuss the general implications of molecular epigenetics with special emphasis on drug abuse, bar-codes, pyknons, and miRNAs for translational and clinical research. We discuss the application of the recent recursive algorithm of biology to this field and propose to synthesize the Genomic and Epigenomic views into a holistic approach of HoloGenomics.

Indexed as

AIDScoding and noncoding DNAepigeneticsHIV-1hologenomicsmolecular medicine paradigm-shiftNeuroAIDStranslation-clinic

Identifiers

PMID19052667
PMCPMC2586134
OpenAlexW2011823666

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.