Evidence map›Paper›PMID 19050928›Full record

ArticleMolecular genetics and genomics : MGG2009

Gene expression changes during asexual sporulation by the late blight agent Phytophthora infestans occur in discrete temporal stages.

Howard S Judelson, Reena D Narayan, Audrey M V Ah-Fong, Kyoung Su Kim

Abstract readValidation Study
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Dual transcriptomic analysis reveals early inducedFrontiers in plant science · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Phytophthora cinnamomi.Molecular plant pathology · 2018
    Article
  7. Frontiers in microbiology · 2017
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Howard S JudelsonDepartment of Plant Pathology and Microbiology, University of California, Riverside, CA 92521, USA. howard.judelson@ucr.edu
Reena D Narayan
Audrey M V Ah-Fong
Kyoung Su Kim
University of California, Riverside · USUniversity of California System · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcriptional changes during asexual sporangia formation by the late blight pathogen Phytophthora infestans were identified using microarrays representing 15,646 genes and RNA from sporulation time-courses, purified spores, and sporulation-defective strains. Results were confirmed by reverse transcription-polymerase chain reaction analyses of sporulation on artificial media and infected tomato. During sporulation, about 12% of genes were up-regulated compared to vegetative hyphae and 5% were down-regulated. The most prevalent induced genes had functions in signal transduction, flagella assembly, cellular organization, metabolism, and molecular or vesicular transport. Distinct patterns of expression were discerned based on the kinetics of mRNA induction and their persistence in sporangia. For example, most flagella-associated transcripts were induced very early in sporulation and maintained in sporangia, while many participants in metabolism or small molecule transport were also induced early but had low levels in sporangia. Data from this study are a resource for understanding sporogenesis, which is critical to the pathogenic success of P. infestans and other oomycetes.

Indexed as

Gene Expression Regulation, FungalSpores, FungalCluster AnalysisGenes, FungalOligonucleotide Array Sequence AnalysisPhytophthora infestansReverse Transcriptase Polymerase Chain ReactionRNA, MessengerRNA, Messenger

Identifiers

PMID19050928
OpenAlexW2000857652

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.