Evidence map›Paper›PMID 19047366›Full record

ArticleMolecular and cellular biology2009

Regulation of nuclear positioning and dynamics of the silent mating type loci by the yeast Ku70/Ku80 complex.

Kerstin Bystricky, Haico Van Attikum, Maria-Dolores Montiel, Vincent Dion, Lutz Gehlen, Susan M Gasser

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In one paragraph

Article in Molecular and cellular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 70 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Kerstin BystrickyLaboratoire de Biologie Moléculaire Eucaryote, Bâtiment IBCG, Université de Toulouse, Toulouse, France. kerstin@ibcg.biotoul.fr
Haico Van Attikum
Maria-Dolores Montiel
Vincent Dion
Lutz Gehlen
Susan M Gasser
Friedrich Miescher Institute · CHLaboratoire de Biologie Moléculaire des Eucaryotes · FRLeiden University Medical Center · NLUniversité de Toulouse · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have examined the hypothesis that the highly selective recombination of an active mating type locus (MAT) with either HMLalpha or HMRa is facilitated by the spatial positioning of relevant sequences within the budding yeast (Saccharomyces cerevisiae) nucleus. However, both position relative to the nuclear envelope (NE) and the subnuclear mobility of fluorescently tagged MAT, HML, or HMR loci are largely identical in haploid a and alpha cells. Irrespective of mating type, the expressed MAT locus is highly mobile within the nuclear lumen, while silent loci move less and are found preferentially near the NE. The perinuclear positions of HMR and HML are strongly compromised in strains lacking the Silent information regulator, Sir4. However, HMLalpha, unlike HMRa and most telomeres, shows increased NE association in a strain lacking yeast Ku70 (yKu70). Intriguingly, we find that the yKu complex is associated with HML and HMR sequences in a mating-type-specific manner. Its abundance decreases at the HMLalpha donor locus and increases transiently at MATa following DSB induction. Our data suggest that mating-type-specific binding of yKu to HMLalpha creates a local chromatin structure competent for recombination, which cooperates with the recombination enhancer to direct donor choice for gene conversion of the MATa locus.

Indexed as

Genes, Mating Type, FungalAntigens, NuclearCell NucleusChromosomes, FungalDNA-Binding ProteinsDNA Breaks, Double-StrandedDNA RepairGene ConversionKu AutoantigenMutagenesis, InsertionalMutationNuclear EnvelopeOperator Regions, GeneticProtein BindingRad52 DNA Repair and Recombination ProteinRecombination, GeneticAntigens, NuclearDNA-Binding ProteinsKu AutoantigenRad52 DNA Repair and Recombination ProteinRAD52 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID19047366
PMCPMC2630671
OpenAlexW2114099572

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.