Evidence map›Paper›PMID 19043559›Full record

ArticlePLoS pathogens2008

snoRNA, a novel precursor of microRNA in Giardia lamblia.

Ashesh A Saraiya, Ching C Wang

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 141 papers.

0numbers the graph read from it
0cells of the map it votes in
141citing papers in PubMed
18.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

141 citing papers in PubMed, 248 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. First Characterization and Zoonotic Potential Evaluation ofTransboundary and emerging diseases · 2025
    Article
  6. Review
  7. Exploration ofParasitology · 2024
    Review
  8. Article
  9. Analysis ofPharmaceuticals (Basel, Switzerland) · 2023
    Review
  10. Review
  11. The Exosome-like Vesicles ofInternational journal of molecular sciences · 2023
    Article
  12. MicroRNAs in Medicinal Plants.International journal of molecular sciences · 2022
    Review
  13. Review
  14. Review
  15. Review
  16. Article
  17. Emerging Functions for snoRNAs and snoRNA-Derived Fragments.International journal of molecular sciences · 2021
    Review
  18. Article
  19. Review
  20. Article

81 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Ashesh A SaraiyaDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California, USA.
Ching C Wang
University of California, San Francisco · US

Funding

Translation Regulation in Giardia lambliaR01AI030475 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WANG, CHING CHUNG · 1991 to 2011
$3.9M
NIAID NIH HHS AI30475NIAID NIH HHS R01 AI030475
6 · The paper itself

Abstract

An Argonaute homolog and a functional Dicer have been identified in the ancient eukaryote Giardia lamblia, which apparently lacks the ability to perform RNA interference (RNAi). The Giardia Argonaute plays an essential role in growth and is capable of binding specifically to the m(7)G-cap, suggesting a potential involvement in microRNA (miRNA)-mediated translational repression. To test such a possibility, small RNAs were isolated from Giardia trophozoites, cloned, and sequenced. A 26-nucleotide (nt) small RNA (miR2) was identified as a product of Dicer-processed snoRNA GlsR17 and localized to the cytoplasm by fluorescence in situ hybridization, whereas GlsR17 was found primarily in the nucleolus of only one of the two nuclei in Giardia. Three other small RNAs were also identified as products of snoRNAs, suggesting that the latter could be novel precursors of miRNAs in Giardia. Putative miR2 target sites were identified at the 3'-untranslated regions (UTR) of 22 variant surface protein mRNAs using the miRanda program. In vivo expression of Renilla luciferase mRNA containing six identical miR2 target sites in the 3'-UTR was reduced by 40% when co-transfected with synthetic miR2, while the level of luciferase mRNA remained unaffected. Thus, miR2 likely affects translation but not mRNA stability. This repression, however, was not observed when Argonaute was knocked down in Giardia using a ribozyme-antisense RNA. Instead, an enhancement of luciferase expression was observed, suggesting a loss of endogenous miR2-mediated repression when this protein is depleted. Additionally, the level of miR2 was significantly reduced when Dicer was knocked down. In all, the evidence indicates the presence of a snoRNA-derived miRNA-mediated translational repression in Giardia.

Indexed as

3' Untranslated RegionsAnimalsBase SequenceBinding SitesCloning, MolecularGiardia lambliaMicroRNAsProtein BiosynthesisRibonuclease IIIRNA, Small Nucleolar3' Untranslated RegionsMicroRNAsRibonuclease IIIRNA, Small Nucleolar

Identifiers

PMID19043559
PMCPMC2583053
OpenAlexW2139074713

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.