Evidence map›Paper›PMID 19039618›Full record

ArticleDer Pathologe2008

[Mathematical modelling in systems biology. Simulation of the desmoplastic stromal reaction as an example].

A Groh, A K Louis, F Weichert, T Richards, M Wagner

Abstract readEnglish Abstract
PubMed Publisher
In one paragraph

Article in Der Pathologe, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

A GrohInstitut für Angewandte Mathematik, Universität des Saarlandes, Campus Saarbrücken, Gebäude E1.1, 151150, 66041 Saarbrücken. groh@num.uni-sb.de
A K Louis
F Weichert
T Richards
M Wagner

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A mathematical model of collagen fiber mesh formation was created to evaluate the possible role of chemotaxis and haptotaxis in the histomorphology of a desmoplastic stromal reaction (DSR). Fibroblasts were mathematicaly interpreted as mobile discrete objects, characterized by their velocity and position, both dependent on time. This resulted in cell migration paths, commonly termed "trajectories" which are modulated as stochastic process. The implementation of chemotactic effects requires knowledge of the concentration and distribution of the appropriate chemical substance in the scenario. A simplistic model assumption allows the calculation of a numerical solution of the resulting diffusion equation. Adding haptotaxis necessitates the simulation of the extracellular matrix (ECM). The fiber distribution is modeled as a vector field which contains information on both, fiber density and direction. The production of new fibers is based on ordinary differential equations coupled with the migratory behavior of the cells. Filters help smooth the trajectories. Appropriate visualization allows a direct comparison of the simulation results with histomorphology. Matches between computed data and their real counterparts indicate that the development of mathematical models is appropriate to describe and forecast the course of DSR. This makes systems biology a stepping stone to improving biomedical research.

Indexed as

Computer SimulationModels, TheoreticalCarcinoma, Squamous CellCell MovementChemotaxisCollagenComputer GraphicsDiffusionExtracellular MatrixFacial NeoplasmsFibroblastsHumansImage Processing, Computer-AssistedJaw NeoplasmsMicrofibrilsMouth NeoplasmsCollagen

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.