Evidence map›Paper›PMID 19039607›Full record

ArticleHuman genetics2009

A genetic association study in the Gambia using tagging polymorphisms in the major histocompatibility complex class III region implicates a HLA-B associated transcript 2 polymorphism in severe malaria susceptibility.

Mahamadou Diakite, Taane G Clark, Sarah Auburn, Susana Campino, Andrew E Fry, Angela Green, Andrew P Morris, Anna Richardson, Muminatou Jallow, Fatou Sisay-Joof and 3 more

Open access · greenAbstract read
In one paragraph

Article in Human genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

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  4. PeerJ · 2018
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  8. The host genetic diversity in malaria infection.Journal of tropical medicine · 2012
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Mahamadou DiakiteWellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Taane G Clark
Sarah Auburn
Susana Campino
Andrew E Fry
Angela Green
Andrew P Morris
Anna Richardson
Muminatou Jallow
Fatou Sisay-Joof
Margaret Pinder
Dominic P Kwiatkowski
Kirk A Rockett
Centre for Human Genetics · GBMRC Unit the Gambia · GMUniversity of Oxford · GBWellcome Sanger Institute · GBUniversity of Bamako · ML

Funding

Medical Research Council G0200454Medical Research Council G0200454(62635)Medical Research Council G0600230Medical Research Council G0600230(77610)Medical Research Council G0600718Medical Research Council G0600718(80133)Medical Research Council G19/9Wellcome Trust 064890Wellcome Trust 077383Wellcome Trust 081682Wellcome Trust 082370
6 · The paper itself

Abstract

The tumour necrosis factor (TNF) gene and other genes flanking it in the major histocompatibility complex (MHC) class III region are potentially important mediators of both immunity and pathogenesis of malaria. We investigated the association of severe malaria with 11 haplotype tagging-polymorphisms for 11 MHC class III candidate genes, including TNF, lymphotoxin alpha (LTA), allograft inflammatory factor 1 (AIF1), and HLA-B associated transcript 2 (BAT2). An analysis of 2,162 case-controls demonstrated the first evidence of association between a BAT2 polymorphism (rs1046089) and severe malaria.

Indexed as

Genetic Predisposition to DiseaseCase-Control StudiesChildChild, PreschoolFemaleHumansInfantInfant, NewbornMalariaMaleProteinsProteinsPRRC2A protein, human

Identifiers

PMID19039607
PMCPMC2992315
OpenAlexW2001244982

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.