Evidence map›Paper›PMID 19038967›Full record

ArticleThe Journal of biological chemistry2009

Crystal structure and autoactivation pathway of the precursor form of human tripeptidyl-peptidase 1, the enzyme deficient in late infantile ceroid lipofuscinosis.

Jayita Guhaniyogi, Istvan Sohar, Kalyan Das, Ann M Stock, Peter Lobel

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 65 citations in OpenAlex.

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  8. Hidden Relationships betweenInternational journal of molecular sciences · 2022
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  14. Marginal protein stability drives subcellular proteome isoelectric point.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Jayita GuhaniyogiCenter for Advanced Biotechnology and Medicine, University of Medicine and Dentistry of New Jersey-Robert Wood Johnson Medical School, New Jersey, USA.
Istvan Sohar
Kalyan Das
Ann M Stock
Peter Lobel
Advanced Pharma · USHoward Hughes Medical Institute · USRutgers, The State University of New Jersey · US

Funding

NOVEL LYSOSOMAL ENZYME DEFICIENT IN BATTEN DISEASER01NS037918 · NINDS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI SLEAT, DAVID EDWARD · 1998 to 2023
$7.3M
MALDI TOF TOF MASS SPECTROMETER: GENETICSS10RR020932 · NCRR · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI LOBEL, PETER · 2005 to 2005
$500k
TANDEM MASS SPECTROMETER: STRUCTURE OF HIV REVERSE TRANSCRIPTASE WITH SUBSTRATESS10RR017992 · NCRR · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI LOBEL, PETER · 2004 to 2004
$342k
Howard Hughes Medical InstituteNCRR NIH HHS S10 RR017992NCRR NIH HHS S10 RR020932NINDS NIH HHS NS037918NINDS NIH HHS R01 NS037918
6 · The paper itself

Abstract

Late infantile neuronal ceroid lipofuscinosis is a fatal childhood neurological disorder caused by a deficiency in the lysosomal protease tripeptidyl-peptidase 1 (TPP1). TPP1 represents the only known mammalian member of the S53 family of serine proteases, a group characterized by a subtilisin-like fold, a Ser-Glu-Asp catalytic triad, and an acidic pH optimum. TPP1 is synthesized as an inactive proenzyme (pro-TPP1) that is proteolytically processed into the active enzyme after exposure to low pH in vitro or targeting to the lysosome in vivo. In this study, we describe an endoglycosidase H-deglycosylated form of TPP1 containing four Asn-linked N-acetylglucosamines that is indistinguishable from fully glycosylated TPP1 in terms of autocatalytic processing of the proform and enzymatic properties of the mature protease. The crystal structure of deglycosylated pro-TPP1 was determined at 1.85 angstroms resolution. A large 151-residue C-shaped prodomain makes extensive contacts as it wraps around the surface of the catalytic domain with the two domains connected by a 24-residue flexible linker that passes through the substrate-binding groove. The proenzyme structure reveals suboptimal catalytic triad geometry with its propiece linker partially blocking the substrate-binding site, which together serve to prevent premature activation of the protease. Finally, we have identified numerous processing intermediates and propose a structural model that explains the pathway for TPP1 activation in vitro. These data provide new insights into TPP1 function and represent a valuable resource for constructing improved TPP1 variants for treatment of late infantile neuronal ceroid lipofuscinosis.

Indexed as

Protein FoldingAminopeptidasesBinding SitesCell LineCrystallography, X-RayDipeptidyl-Peptidases and Tripeptidyl-PeptidasesEndopeptidasesEnzyme ActivationEnzyme PrecursorsGlycosylationHumansModels, MolecularMutationNeuronal Ceroid-LipofuscinosesProtein Structure, SecondaryProtein Structure, TertiaryAminopeptidasesDipeptidyl-Peptidases and Tripeptidyl-PeptidasesEndopeptidasesEnzyme PrecursorsSerine ProteasesTPP1 protein, humanTripeptidyl-Peptidase 1

Identifiers

PMID19038967
PMCPMC2635056
OpenAlexW2014430225

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.