Evidence map›Paper›PMID 19036789›Full record

ArticleNucleic acids research2009

rasiRNA pathway controls antisense expression of Drosophila telomeric retrotransposons in the nucleus.

Sergey Shpiz, Dmitry Kwon, Yakov Rozovsky, Alla Kalmykova

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
7.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Transcriptional quiescence in primordial germ cells.Critical reviews in biochemistry and molecular biology · 2018
    Review
  6. Article
  7. Review
  8. Transposable elements inMobile genetic elements · 2017
    Review
  9. Article
  10. Article
  11. The piRNA Pathway Guards the Germline Genome Against Transposable Elements.Advances in experimental medicine and biology · 2016
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Untangling the web: the diverse functions of the PIWI/piRNA pathway.Molecular reproduction and development · 2013
    Review
  18. Article
  19. Small RNA in the nucleus: the RNA-chromatin ping-pong.Current opinion in genetics & development · 2012
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sergey ShpizInstitute of Molecular Genetics, Russian Academy of Sciences, Moscow, Russia.
Dmitry Kwon
Yakov Rozovsky
Alla Kalmykova
Institute of Molecular Genetics · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Telomeres in Drosophila are maintained by the specialized telomeric retrotransposons HeT-A, TART and TAHRE. Sense transcripts of telomeric retroelements were shown to be the targets of a specialized RNA-interference mechanism, a repeat-associated short interfering (rasi)RNA-mediated system. Antisense rasiRNAs play a key role in this mechanism, highlighting the importance of antisense expression in retrotransposon silencing. Previously, bidirectional transcription was reported for the telomeric element TART. Here, we show that HeT-A is also bidirectionally transcribed, and HeT-A antisense transcription in ovaries is regulated by a promoter localized within its 3' untranslated region. A remarkable feature of noncoding HeT-A antisense transcripts is the presence of multiple introns. We demonstrate that sense and antisense HeT-A-specific rasiRNAs are present in the same tissue, indicating that transcripts of both directions may be considered as natural targets of the rasiRNA pathway. We found that the expression of antisense transcripts of telomeric elements is regulated by the RNA silencing machinery, suggesting rasiRNA-mediated interplay between sense and antisense transcripts in the cell. Finally, this regulation occurs in the nucleus since disruption of the rasiRNA pathway leads to an accumulation of TART and HeT-A transcripts in germ cell nuclei.

Indexed as

RetroelementsRNA InterferenceAnimalsCell NucleusDrosophilaFemaleIntronsMutationOvaryPromoter Regions, GeneticRNA, AntisenseRNA, Small InterferingTelomereTranscription Initiation SiteRetroelementsRNA, AntisenseRNA, Small Interfering

Identifiers

PMID19036789
PMCPMC2615633
OpenAlexW1986641814

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.