Evidence map›Paper›PMID 19036139›Full record

ArticleBMC molecular biology2008

Factors acting on Mos1 transposition efficiency.

Ludivine Sinzelle, Gwenhael Jégot, Benjamin Brillet, Florence Rouleux-Bonnin, Yves Bigot, Corinne Augé-Gouillou

Open access · hybridAbstract read
In one paragraph

Article in BMC molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  8. Target capture during Mos1 transposition.The Journal of biological chemistry · 2014
    Article
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Ludivine SinzelleUniversité François Rabelais de Tours, GICC, UFR des Sciences & Techniques, Parc Grandmont, 37200 Tours, France. sinzellel@yahoo.fr
Gwenhael Jégot
Benjamin Brillet
Florence Rouleux-Bonnin
Yves Bigot
Corinne Augé-Gouillou
Centre National de la Recherche Scientifique · FRLaboratoire de Mathématiques et Physique Théorique · FRCentre Hospitalier Universitaire de Tours · FRUniversité de Tours · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMariner-like elements (MLEs) are widespread DNA transposons in animal genomes. Although in vitro transposition reactions require only the transposase, various factors depending on the host, the physico-chemical environment and the transposon sequence can interfere with the MLEs transposition in vivo.

resultsThe transposition of Mos1, first isolated from drosophila mauritiana, depends of both the nucleic acid sequence of the DNA stuffer (in terms of GC content), and its length. We provide the first in vitro experimental demonstration that MITEs of MLE origin, as small as 80 to 120-bp, are able to transpose. Excessive temperature down-regulates Mos1 transposition, yielding excision products unable to re-integrate. Finally, the super-helicity of the DNA transposon donor has a dramatic impact on the transposition efficiency.

conclusionThe study highlights how experimental conditions can bias interpretation of mariner excision frequency and quality. In vitro, the auto-integration pathway markedly limits transposition efficiency to new target sites, and this phenomenon may also limit events in the natural host. We propose a model for small transposons transposition that bypasses DNA bending constraints.

Indexed as

Recombination, GeneticAnimalsBase SequenceDNA, CircularDNA Transposable ElementsDrosophilaModels, BiologicalModels, GeneticMolecular Sequence DataNucleic Acid ConformationTemperatureTerminal Repeat SequencesTime FactorsDNA, CircularDNA Transposable Elements

Identifiers

PMID19036139
PMCPMC2642840
OpenAlexW2026830284

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.