Evidence map›Paper›PMID 1903535›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1991

Ferritin mRNA: interactions of iron regulatory element with translational regulator protein P-90 and the effect on base-paired flanking regions.

C M Harrell, A R McKenzie, M M Patino, W E Walden, E C Theil

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1991. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 95 citations in OpenAlex.

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  12. The up-regulation of ferritin expression using a small-molecule ligand to the native mRNA.Proceedings of the National Academy of Sciences of the United States of America · 2006
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

C M HarrellDepartment of Biochemistry, North Carolina State University, Raleigh 27695-7622.
A R McKenzie
M M Patino
W E Walden
E C Theil
North Carolina State University · US

Funding

RED CELL FERRITIN: ONTOGENETIC CONTROLR01DK020251 · NIDDK · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI GOSS, DIXIE J, THEIL, ELIZABETH C · 1986 to 2010
$5.1M
Ferritin: Protein/mRNA/DNA in Fe/O Regulation/MetabolismR56DK020251 · NIDDK · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI GOSS, DIXIE J, THEIL, ELIZABETH C · 2008 to 2008
$120k
RED CELL FERRITIN MRNA AND PROTEIN-STRUCTURE/FUNCTIONR37DK020251 · NIDDK · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI THEIL, ELIZABETH C · 1987 to 1994
–
NIDDK NIH HHS DK20251
6 · The paper itself

Abstract

The ferritin iron regulatory element (IRE), a conserved sequence of 28 nucleotides in a hairpin loop, is a conserved mRNA-specific translational regulatory element; flanking the IRE are regions of varying sequence, which form 9-17 base pairs close to the 5' cap. P-90 is a ferritin mRNA-specific translation regulatory protein purified from animal liver and reticulocytes. To study the P-90-RNA interaction, protein nucleases (RNase S1 and T1) and chemical nucleases FeEDTA and/or 1,10-phenanthroline-Cu were used as probes of an oligonucleotide (n = 55), containing the IRE and flanking regions (FL), and natural ferritin mRNA. Footprints and "toeprints" showed that P-90 binding was confined to the stem and loop of the IRE itself. However, P-90 altered the structure of the flanking region by increasing base stacking or helicity (RNase V1 sensitivity). Comparison of the reactivity of the IRE and flanking regions in natural mRNA and the 55-mer showed that long-range interactions included protecting bulges, single-stranded, and stacked regions from protein nucleases as well as stabilizing the P-90-RNA interaction. Structural integration of the IRE with the base-paired flanking regions was indicated by common features of reactivity (periodic hypersensitivity to FeEDTA) and changes in the FL region caused by P-90. The increased secondary structure of the IRE flanking regions caused by P-90 binding to the IRE provides a likely mechanism for blocking initiation of ferritin mRNA translation, since the combined structure (IRE + FL) is so close (8-17 nucleotides) to the cap.

Indexed as

Gene Expression RegulationRegulatory Sequences, Nucleic AcidAnimalsBase CompositionBase SequenceBinding SitesEdetic AcidFerric CompoundsFerritinsIronMolecular Sequence DataPhenanthrolinesProtein BiosynthesisProteinsRabbitsRibonucleases1,10-phenanthrolineEdetic AcidFe(III)-EDTAFerric CompoundsFerritinsIronPhenanthrolinesProteinsribonuclease SRibonucleasesRibonuclease T1RNA, Messenger

Identifiers

PMID1903535
PMCPMC51619
OpenAlexW1985513702

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.