Evidence map›Paper›PMID 19034928›Full record

ArticleJournal of cellular physiology2009

Butyrate and vitamin D3 induce transcriptional attenuation at the cyclin D1 locus in colonic carcinoma cells.

Sandra Maier, M Cecilia Daroqui, Stefan Scherer, Stefan Roepcke, Anna Velcich, Shailesh M Shenoy, Robert H Singer, Leonard H Augenlicht

Open access · greenAbstract read
In one paragraph

Article in Journal of cellular physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. The role of vitamin D in hepatic metastases from colorectal cancer.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2018
    Review
  4. Review
  5. Review
  6. The renin-angiotensin system mediates EGF receptor-vitamin d receptor cross-talk in colitis-associated colon cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2014
    Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Transcriptional attenuation in colon carcinoma cells in response to butyrate.Cancer prevention research (Philadelphia, Pa.) · 2010
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Sandra MaierDepartment of Medicine, Albert Einstein College of Medicine, Bronx, New York 10467, USA.
M Cecilia Daroqui
Stefan Scherer
Stefan Roepcke
Anna Velcich
Shailesh M Shenoy
Robert H Singer
Leonard H Augenlicht
Albert Einstein College of Medicine · USMax Planck Institute for Molecular Genetics · DE

Funding

MOLECULAR-NUTRIENT INTERACTIONS IN INTESTINAL CANCERU54CA100926 · NCI · MONTEFIORE MEDICAL CENTER (BRONX, NY) · PI AUGENLICHT, LEONARD H · 2003 to 2008
$9.7M
MOLECULAR CLASSIFICATION OF COLON TUMORSU01CA088104 · NCI · MONTEFIORE MEDICAL CENTER (BRONX, NY) · PI AUGENLICHT, LEONARD H. · 2000 to 2004
$5.1M
FISH &CHIPS: SINGLE CELL EXPRESSION OF CANCER GENESR33CA083208 · NCI · YESHIVA UNIVERSITY · PI SINGER, ROBERT H · 2000 to 2006
$3.9M
SINGLE RNA MOLECULE MOVEMENT VISUALIZED IN LIVING CELLSR01EB002060 · NIBIB · YESHIVA UNIVERSITY · PI SINGER, ROBERT H · 2003 to 2008
$2.0M
FATTY ACID MODULATION OF COLON CELL TRANSFORMATIONR21CA123473 · NCI · MONTEFIORE MEDICAL CENTER (BRONX, NY) · PI AUGENLICHT, LEONARD H · 2007 to 2008
$305k
NCI NIH HHS R21 CA123473NCI NIH HHS R33 CA083208NCI NIH HHS R33 CA83208NCI NIH HHS U01 CA088104NCI NIH HHS U54 CA100926NIBIB NIH HHS R01 EB002060PHS HHS P013330
6 · The paper itself

Abstract

In stimulating maturation of colonic carcinoma cells, the short chain fatty acid butyrate, and 1alpha,25-dihydroxyvitamin D(3), were shown to attenuate transcription of the cyclin D1 gene, giving rise to truncated transcripts of this locus. Moreover, a sequence which is highly conserved in the human, mouse, rat, and dog genome was found in the 4 kb long intron 3 of the human cyclin D1 gene, and is capable of forming a hairpin structure similar to that of microRNA precursors. The expression of this sequence is also decreased by the attenuation. Thus, the transcriptional attenuation at the cyclin D1 locus not only down-regulates the expression of this key gene in mucosal cell maturation and tumorigenesis, but may also abrogate the generation of a molecule that encompasses this conserved sequence in cyclin D1 intron 3.

Indexed as

AnimalsBase SequenceButyratesCell Line, TumorCholecalciferolColonic NeoplasmsCyclin D1Gene Expression Regulation, NeoplasticHumansIn Situ Hybridization, FluorescenceIntronsMiceMolecular Sequence DataNucleic Acid ConformationTranscription, GeneticButyratesCCND1 protein, humanCholecalciferolCyclin D1

Identifiers

PMID19034928
PMCPMC2763190
OpenAlexW2118676918

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.