Evidence map›Paper›PMID 19031453›Full record

ArticleJournal of medical virology2009

Diversifying selective pressure on influenza B virus hemagglutinin.

Jun Shen, Brian D Kirk, Jianpeng Ma, Qinghua Wang

Open access · greenAbstract read
In one paragraph

Article in Journal of medical virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 56 citations in OpenAlex.

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  6. medRxiv : the preprint server for health sciences · 2025
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  19. Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects.Interdisciplinary sciences, computational life sciences · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jun ShenDepartment of Bioengineering, Rice University, Houston, Texas, USA.
Brian D Kirk
Jianpeng Ma
Qinghua Wang
Rice University · USBaylor College of Medicine · US

Funding

TRAINING PROGRAM IN COMPUTATIONAL BIOLOGY AND MEDICINET15LM007093 · NLM · RICE UNIVERSITY · PI Lydia E. Kavraki · 1992 to 2026
$20.8M
New Simulation Methods at Multi-Scales and -ResolutionsR01GM067801 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI MA, JIANPENG · 2003 to 2015
$3.4M
Structural and Functional Study of Influenza Virus HemagglutininR01AI067839 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI WANG, QINGHUA · 2009 to 2013
$1.5M
NIAID NIH HHS R01 AI067839NIGMS NIH HHS GM067801NIGMS NIH HHS R01 GM067801NLM NIH HHS 5T15LM07093NLM NIH HHS T15 LM007093
6 · The paper itself

Abstract

Influenza B virus hemagglutinin (HA) is a major surface glycoprotein with frequent amino acid substitutions. However, the roles of antibody selection in the amino acid substitutions of HA were still poorly understood. In order to gain insights into this important issue, an analysis was conducted on a total of 271 HA1 sequences of influenza B virus strains isolated during 1940-2007. In this analysis, phylogenetic analysis by maximum likelihood (PAML) package was used to detect the existence of positive selection and to identify positively selected sites on HA1. Strikingly, all the positively selected sites were located in the four major epitopes (120-loop, 150-loop, 160-loop, and 190-helix) of HA identified in previous studies, thus supporting a predominant role of antibody selection in HA evolution. Of particular significance is the involvement of the 120-loop in positive selection, which may become increasingly important in future field isolates. Despite the absence of different subtypes, influenza B virus HA continued to evolve into new sublineages, within which the four major epitopes were targeted selectively in positive selection. Thus, any newly emerging strains need to be placed in the context of their evolutionary history in order to understand and predict their epidemic potential.

Indexed as

Evolution, MolecularSelection, GeneticEpitopesHemagglutinin Glycoproteins, Influenza VirusInfluenza B virusModels, MolecularPhylogenyProtein Structure, TertiaryRNA, ViralSequence Analysis, DNAEpitopesHemagglutinin Glycoproteins, Influenza Virushemagglutinin HA1, influenza B virusRNA, Viral

Identifiers

PMID19031453
PMCPMC2697605
OpenAlexW1480714608

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.