Evidence map›Paper›PMID 19031409›Full record

ArticleEnvironmental and molecular mutagenesis2009

Mutational analysis of the mitochondrial tRNA genes and flanking regions in umbilical cord tissue from uninfected infants receiving AZT-based therapies for prophylaxis of HIV-1.

Salina M Torres, Dale M Walker, Consuelo L McCash, Meghan M Carter, Jessica Ming, Edmund M Cordova, Rachel M Pons, Dennis L Cook, Steven K Seilkop, William C Copeland and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Environmental and molecular mutagenesis, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Observational
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Salina M TorresLovelace Respiratory Research Institute, Albuquerque, New Mexico, USA.
Dale M Walker
Consuelo L McCash
Meghan M Carter
Jessica Ming
Edmund M Cordova
Rachel M Pons
Dennis L Cook
Steven K Seilkop
William C Copeland
Vernon E Walker
Lovelace Respiratory Research Institute · USNational Institutes of Health · US

Funding

Human Mitochondrial Dna Polymerase With Anti-hiv NucleotidesZIAES065080 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI COPELAND, WILLIAM · 2009 to 2025
$9.6M
In utero NRTIs &mtDNA Changes in Cardiac/Vascular CellsR01HL072727 · NHLBI · LOVELACE BIOMEDICAL &ENVIRONMENTAL RES · PI WALKER, VERNON E · 2002 to 2005
$2.8M
Pharmacological and dietary inhibition of a novel metabolic-epigenetic crosstalk in head and neck cancerR01DE033648 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI De-Chen Lin · 2024 to 2026
$1.5M
Mitochondrial toxicity of AZT-3TC in experimental modelsF31HL081928 · NHLBI · LOVELACE BIOMEDICAL & ENVIRONMENTAL RESEARCH INSTITUTE · PI TORRES, SALINA M · 2005 to 2007
$59k
MUTAGENICITY OF AZT IN CHILDREN OF HIV-INFECTED WOMENR01HD033648 · NICHD · WADSWORTH CENTER · PI WALKER, VERNON E · 1997 to 1999
–
NHLBI NIH HHS 1 F31 HL081928NHLBI NIH HHS F31 HL081928NHLBI NIH HHS R01 HL072727NICHD NIH HHS R01 HD033648NIDCR NIH HHS R01 DE033648
6 · The paper itself

Abstract

A sensitive vertical denaturing gradient gel electrophoresis (DGGE) method, using 13 unipolar psoralen-clamped PCR primer pairs, was developed for detecting sequence variants in the 22 tRNA genes and flanking regions (together spanning approximately 21%) of the human mitochondrial genome. A study was conducted to determine (i) if mitochondrial DNA (mtDNA) polymorphisms and/or mutations were detectable in healthy newborns and (ii) if prepartum 3'-azido-2',3'-dideoxythymidine (AZT) based HIV-1 prophylaxis was associated with significant increases in mtDNA mutations and changes in the degree of heteroplasmy of sequence variants in uninfected infants born to HIV-1-infected mothers. DGGE analysis of umbilical cord tissue (where vascular endothelium and smooth muscle cells are the major source of mtDNA) showed that mtDNA sequence variants were significantly elevated by threefold in AZT-treated infants compared with unexposed controls (P < 0.001), with 24 changes observed in 19/52 (37%) treated newborns (averaging 0.46 changes/subject) versus only eight changes found in 7/55 (13%) unexposed newborns (averaging 0.15 changes/subject). Six distinct sequence variants occurring in unexposed controls were predominately synonymous and homoplasmic, representing previously reported polymorphisms. Uninfected infants exposed to a combination of AZT and 2',3'-dideoxy-3'-thiacytidine and "maternal HIV-1" had a significant shift in the spectrum of mutations (P = 0.04) driven by increases in nonsynonymous heteroplasmic sequence variants at polymorphic sites (10 distinct variants) and novel sites (four distinct variants). While the weight of evidence suggests that prepartum AZT-based prophylaxis produces mtDNA mutations, additional research is needed to determine the degree to which fetal responses to maternal HIV-1 infection, in the absence of antiretroviral treatment, contribute to prenatal mtDNA mutagenesis.

Indexed as

MutationBase SequenceCase-Control StudiesDNA, MitochondrialDNA PrimersDrug Therapy, CombinationHIV-1HIV InfectionsHumansInfantLamivudinePolymorphism, GeneticReverse Transcriptase InhibitorsRNA, TransferUmbilical CordZidovudineDNA, MitochondrialDNA PrimersLamivudineReverse Transcriptase InhibitorsRNA, TransferZidovudine

Identifiers

PMID19031409
PMCPMC3191876
OpenAlexW2029833746

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.