Evidence map›Paper›PMID 19031011›Full record

ReviewJournal of structural and functional genomics2009

Ratiocinative screen of eukaryotic integral membrane protein expression and solubilization for structure determination.

Franklin A Hays, Zygy Roe-Zurz, Min Li, Libusha Kelly, Franz Gruswitz, Andrej Sali, Robert M Stroud

Abstract readReview
In one paragraph

Review in Journal of structural and functional genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Unlocking the eukaryotic membrane protein structural proteome.Current opinion in structural biology · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Franklin A HaysDepartment of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, CA 94158-2517, USA. haysf@msg.ucsf.edu
Zygy Roe-Zurz
Min Li
Libusha Kelly
Franz Gruswitz
Andrej Sali
Robert M Stroud

Funding

Yeast ExpressionP50GM073210 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 2004 to 2013
$21.5M
SPECIALIZED CENTER FOR THE PROTEIN STRUCTURE INITIATIVEU54GM074929 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHOE, SENYON · 2005 to 2009
$16.6M
Molecular Basis for Aquaporin ConductanceF32GM078754 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HAYS, FRANKLIN ALAN · 2006 to 2008
$145k
NIGMS NIH HHS F32 GM078754NIGMS NIH HHS P50 GM073210NIGMS NIH HHS U54 GM074929
6 · The paper itself

Abstract

Persistent hurdles impede the successful determination of high-resolution crystal structures of eukaryotic integral membrane proteins (IMP). We designed a high-throughput structural genomics oriented pipeline that seeks to minimize effort in uncovering high-quality, responsive non-redundant targets for crystallization. This "discovery-oriented" pipeline sidesteps two significant bottlenecks in the IMP structure determination pipeline: expression and membrane extraction with detergent. In addition, proteins that enter the pipeline are then rapidly vetted by their presence in the included volume on a size-exclusion column--a hallmark of well-behaved IMP targets. A screen of 384 rationally selected eukaryotic IMPs in baker's yeast Saccharomyces cerevisiae is outlined to demonstrate the results expected when applying this discovery-oriented pipeline to whole-organism membrane proteomes.

Indexed as

AnimalsCrystallography, X-RayDatabases, ProteinGenomicsHumansMembrane ProteinsProtein ConformationProteomeSaccharomyces cerevisiae ProteinsMembrane ProteinsProteomeSaccharomyces cerevisiae Proteins

Identifiers

PMID19031011
PMCPMC2756966

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.