Evidence map›Paper›PMID 19030769›Full record

ArticleJournal of molecular evolution2008

Recoding of translation in turtle mitochondrial genomes: programmed frameshift mutations and evidence of a modified genetic code.

R David Russell, Andrew T Beckenbach

Open access · hybridAbstract read
In one paragraph

Article in Journal of molecular evolution, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Complete mitochondrial genome of the southern painted turtle (Mitochondrial DNA. Part B, Resources · 2024
    Article
  5. Complete mitochondrial genome of the razor-backed musk turtle (Mitochondrial DNA. Part B, Resources · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Complete mitochondrial genome of the Cumberland slider (Mitochondrial DNA. Part B, Resources · 2021
    Article
  10. Characterization of the complete mitogenomes of Baillon's CrakeMitochondrial DNA. Part B, Resources · 2021
    Article
  11. Article
  12. The complete mitochondrial genome of Indian CuckooMitochondrial DNA. Part B, Resources · 2021
    Article
  13. The mitogenome of common snipe,Mitochondrial DNA. Part B, Resources · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Chimeric Translation for Mitochondrial Peptides: Regular and Expanded Codons.Computational and structural biotechnology journal · 2019
    Article
  20. The first complete mitogenome of Indian star tortoise (Mitochondrial DNA. Part B, Resources · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

R David RussellDepartment of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, Canada V5A 1S6.
Andrew T Beckenbach
Simon Fraser University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A +1 frameshift insertion has been documented in the mitochondrial gene nad3 in some birds and reptiles. By sequencing polyadenylated mRNA of the chicken (Gallus gallus), we have shown that the extra nucleotide is transcribed and is present in mature mRNA. Evidence from other animal mitochondrial genomes has led us to hypothesize that certain mitochondrial translation systems have the ability to tolerate frameshift insertions using programmed translational frameshifting. To investigate this, we sequenced the mitochondrial genome of the red-eared slider turtle (Trachemys scripta), where both the widespread nad3 frameshift insertion and a novel site in nad4l were found. Sequencing the region surrounding the insertion in nad3 in a number of other turtles and tortoises reveal general mitochondrial +1 programmed frameshift site features as well as the apparent redefinition of a stop codon in Parker's snake-neck turtle (Chelodina parkeri), the first known example of this in vertebrate mitochondria.

Indexed as

Amino Acid SequenceAnimalsBase SequenceConserved SequenceElectron Transport Complex IFrameshift MutationGenetic CodeGenome, MitochondrialMolecular Sequence DataPhylogenyProtein BiosynthesisSequence AlignmentTurtlesElectron Transport Complex I

Identifiers

PMID19030769
PMCPMC2706983
OpenAlexW2142215487

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.