Evidence map›Paper›PMID 19029251›Full record

ArticleMolecular and cellular biology2009

Human UBN1 is an ortholog of yeast Hpc2p and has an essential role in the HIRA/ASF1a chromatin-remodeling pathway in senescent cells.

Gowrishankar Banumathy, Neeta Somaiah, Rugang Zhang, Yong Tang, Jason Hoffmann, Mark Andrake, Hugo Ceulemans, David Schultz, Ronen Marmorstein, Peter D Adams

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 1 synthesis or guideline pooled it, 144 citations in OpenAlex.

  1. Pooled it
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  6. The HUSH epigenetic repressor complex silences PML nuclear body-associated HSV-1 quiescent genomes.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  15. The longevity and reversibility of quiescence inCell cycle (Georgetown, Tex.) · 2023
    Article
  16. Article
  17. The Histone Chaperone Network Is Highly Conserved inInternational journal of molecular sciences · 2023
    Article
  18. Article
  19. Article
  20. Nucleosome proteostasis and histone turnover.Frontiers in molecular biosciences · 2022
    Review

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Gowrishankar BanumathyFox Chase Cancer Center, Philadelphia, Pennsylvania 19111, USA.
Neeta Somaiah
Rugang Zhang
Yong Tang
Jason Hoffmann
Mark Andrake
Hugo Ceulemans
David Schultz
Ronen Marmorstein
Peter D Adams
Fox Chase Cancer Center · USThe Wistar Institute · USKU Leuven · BE

Funding

STRUCTURAL BASIS FOR EPIGENETICS IN AGING AND LONGEVITYP01AG031862 · NIA · WISTAR INSTITUTE · PI GARCIA, BENJAMIN A · 2008 to 2022
$28.3M
INVESTIGATION OF A PUTATIVE NOVEL CYCLIN/CDK2 SUBSTRATER01GM062281 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI ENDERS, GREGORY H. · 2001 to 2009
$2.6M
Regulation of Oncogene-Induced Senescence by Wnt-SignalingR01CA129334 · NCI · UNIVERSITY OF GLASGOW · PI ADAMS, PETER D. · 2008 to 2011
$868k
NCI NIH HHS R01 CA129334NCI NIH HHS R01 CA129334-01NIA NIH HHS P01 AG031862NIA NIH HHS P01AG031862NIGMS NIH HHS R01 GM062281
6 · The paper itself

Abstract

Cellular senescence is an irreversible proliferation arrest, tumor suppression process and likely contributor to tissue aging. Senescence is often characterized by domains of facultative heterochromatin, called senescence-associated heterochromatin foci (SAHF), which repress expression of proliferation-promoting genes. Given its likely contribution to tumor suppression and tissue aging, it is essential to identify all components of the SAHF assembly pathway. Formation of SAHF in human cells is driven by a complex of histone chaperones, namely, HIRA and ASF1a. In yeast, the complex orthologous to HIRA/ASF1a contains two additional proteins, Hpc2p and Hir3p. Using a sophisticated approach to search for remote orthologs conserved in multiple species through evolution, we identified the HIRA-associated proteins, UBN1 and UBN2, as candidate human orthologs of Hpc2p. We show that the Hpc2-related domain of UBN1, UBN2, and Hpc2p is an evolutionarily conserved HIRA/Hir-binding domain, which directly interacts with the N-terminal WD repeats of HIRA/Hir. UBN1 binds to proliferation-promoting genes that are repressed by SAHF and associates with histone methyltransferase activity that methylates lysine 9 of histone H3, a site that is methylated in SAHF. UBN1 is indispensable for formation of SAHF. We conclude that UBN1 is an ortholog of yeast Hpc2p and a novel regulator of senescence.

Indexed as

Cellular SenescenceChromatin Assembly and DisassemblySequence Homology, Amino AcidAmino Acid SequenceCell Cycle ProteinsCell LineConserved SequenceCyclin ACyclin A2Evolution, MolecularHeterochromatinHistone ChaperonesHumansInclusion BodiesMethyltransferasesMolecular ChaperonesASF1A protein, humanCCNA2 protein, humanCell Cycle ProteinsCyclin ACyclin A2HeterochromatinHIRA protein, humanHistone ChaperonesHPC2 protein, S cerevisiaeMethyltransferasesMolecular ChaperonesNuclear ProteinsSaccharomyces cerevisiae ProteinsTrans-ActivatorsTranscription FactorsUBN1 protein, human

Identifiers

PMID19029251
PMCPMC2630694
OpenAlexW2105998561

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.