ArticleNucleic acids research2009
Update of the Diatom EST Database: a new tool for digital transcriptomics.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed, 75 citations in OpenAlex.
- Immobilization of DiatomJournal of microbiology and biotechnology · 2023Article
- Transcriptomic and metabolic signatures of diatom plasticity to light fluctuations.Plant physiology · 2022Article
- Thiamine metabolism genes in diatoms are not regulated by thiamine despite the presence of predicted riboswitches.The New phytologist · 2022Article
- A genomics approach reveals the global genetic polymorphism, structure, and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum.The ISME journal · 2020Article
- Challenging the workhorse: Comparative analysis of eukaryotic micro-organisms for expressing monoclonal antibodies.Biotechnology and bioengineering · 2019Article
- Genome-Wide Comparative Analyses of Polyadenylation Signals in Eukaryotes Suggest a Possible Origin of the AAUAAA Signal.International journal of molecular sciences · 2019Article
- Comparative in depth RNA sequencing of P. tricornutum's morphotypes reveals specific features of the oval morphotype.Scientific reports · 2018Article
- Ocean acidification conditions increase resilience of marine diatoms.Nature communications · 2018Article
- An Emerging Model Diatom to Study Nitrogen Metabolism.The Plant cell · 2017Article
- Rapid induction of GFP expression by the nitrate reductase promoter in the diatom Phaeodactylum tricornutum.PeerJ · 2016Article
- Characterization of marine diatom-infecting virus promoters in the model diatom Phaeodactylum tricornutum.Scientific reports · 2015Article
- Dual Organellar Targeting of Aminoacyl-tRNA Synthetases in Diatoms and Cryptophytes.Genome biology and evolution · 2015Article
- Membrane glycerolipid remodeling triggered by nitrogen and phosphorus starvation in Phaeodactylum tricornutum.Plant physiology · 2015Article
- Article
- Agrigenomics for microalgal biofuel production: an overview of various bioinformatics resources and recent studies to link OMICS to bioenergy and bioeconomy.Omics : a journal of integrative biology · 2013Review
- A novel type of light-harvesting antenna protein of red algal origin in algae with secondary plastids.BMC evolutionary biology · 2013Article
- The transcriptome of the novel dinoflagellate Oxyrrhis marina (Alveolata: Dinophyceae): response to salinity examined by 454 sequencing.BMC genomics · 2011Article
- Stemming epigenetics in marine stramenopiles.Current genomics · 2011Article
- Characterization of the small RNA transcriptome of the diatom, Thalassiosira pseudonana.PloS one · 2011Article
- Phylogenomic analysis of the Chlamydomonas genome unmasks proteins potentially involved in photosynthetic function and regulation.Photosynthesis research · 2010Article
Corrections and comments
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Authors and funding
4 authors at 3 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Diatom Expressed Sequence Tag (EST) Database was constructed to provide integral access to ESTs from these ecologically and evolutionarily interesting microalgae. It has now been updated with 130,000 Phaeodactylum tricornutum ESTs from 16 cDNA libraries and 77,000 Thalassiosira pseudonana ESTs from seven libraries, derived from cells grown in different nutrient and stress regimes. The updated relational database incorporates results from statistical analyses such as log-likelihood ratios and hierarchical clustering, which help to identify differentially expressed genes under different conditions, and allow similarities in gene expression in different libraries to be investigated in a functional context. The database also incorporates links to the recently sequenced genomes of P. tricornutum and T. pseudonana, enabling an easy cross-talk between the expression pattern of diatom orthologs and the genome browsers. These improvements will facilitate exploration of diatom responses to conditions of ecological relevance and will aid gene function identification of diatom-specific genes and in silico gene prediction in this largely unexplored class of eukaryotes. The updated Diatom EST Database is available at http://www.biologie.ens.fr/diatomics/EST3.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.