Evidence map›Paper›PMID 19028447›Full record

ArticleAnalytical biochemistry2009

A radiation target method for size determination of supercoiled plasmid DNA.

T J Anchordoquy, M dC Molina, E S Kempner

Open access · greenAbstract read
In one paragraph

Article in Analytical biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 8 citations in OpenAlex.

  1. Direct Effects of Ionizing Radiation on Macromolecules.Journal of polymer science. Part B, Polymer physics · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

T J AnchordoquySchool of Pharmacy, University of Colorado Health Sciences Center, Denver, CO 80262, USA.
M dC Molina
E S Kempner
University of Colorado Health · USNational Institutes of Health · US

Funding

Biomedical Imaging and VisualizationZIACT000199 · CIT · CENTER FOR INFORMATION TECHNOLOGY · PI KEMPNER, KENNETH M · 2009 to 2018
$6.4M
TELESYNERGY(TM) Medical Consultation WorkStation EnvironZ01CT000199 · CIT · COMPUTER RESEARCH AND TECHNOLOGY · PI KEMPNER, KENNETH M · 1990 to 2008
$1.4M
Formulation of Synthetic Vectors as Lyophilized ProductsR01EB005476 · NIBIB · UNIVERSITY OF COLORADO DENVER · PI ANCHORDOQUY, THOMAS · 2006 to 2009
$947k
Intramural NIH HHS Z01 CT000199Intramural NIH HHS Z99 AR999999Intramural NIH HHS ZIA CT000199NIBIB NIH HHS 1 R01 EB005476-01NIBIB NIH HHS R01 EB005476
6 · The paper itself

Abstract

Supercoiled DNA plasmids were exposed in the frozen state to high-energy electrons. Surviving supercoiled molecules were separated from their degradation products (e.g., open circle and linear forms) by agarose gel electrophoresis and subsequently quantified by staining and image analysis. Complex survival curves were analyzed using radiation target theory, yielding the radiation-sensitive mass of each form. One of the irradiated plasmids was transfected into cells, permitting radiation analysis of gene expression. Loss of this function was associated with a mass much smaller than the entire plasmid molecule, indicating a lack of energy transfer in amounts sufficient to cause structural damage along the DNA polynucleotide. The method of radiation target analysis can be applied to study both structure and function of DNA.

Indexed as

Scattering, RadiationDNA DamageDNA, SuperhelicalElectrophoresis, Agar GelEnergy TransferMethodsNucleic Acid ConformationParticle SizeDNA, Superhelical

Identifiers

PMID19028447
PMCPMC3085921
OpenAlexW1986965563

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.