Evidence map›Paper›PMID 19027069›Full record

ArticleProtein expression and purification2009

Expression and purification of isotopically labeled peptide inhibitors and substrates of cAMP-dependant protein kinase A for NMR analysis.

Larry R Masterson, Nadia Bortone, Tao Yu, Kim N Ha, Ece C Gaffarogullari, Oanh Nguyen, Gianluigi Veglia

Open access · greenAbstract read
In one paragraph

Article in Protein expression and purification, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Larry R MastersonDepartment of Chemistry, University of Minnesota, Minneapolis, MN 55455, USA.
Nadia Bortone
Tao Yu
Kim N Ha
Ece C Gaffarogullari
Oanh Nguyen
Gianluigi Veglia
University of Minnesota · US

Funding

NMR Structural Analysis of Calcium Regulation in MuscleR01GM064742 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI VEGLIA, GIANLUIGI · 2002 to 2019
$7.1M
Chemistry-Biology Interface Training GrantT32GM008700 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DISTEFANO, MARK D · 1999 to 2018
$4.0M
Structural Basis Of Dilated CardiomyopathyR01GM072701 · NIGMS · UNIVERSITY OF MINNESOTA · PI VEGLIA, GIANLUIGI · 2007 to 2015
$2.4M
Structural Basis of Heart Muscle Function and DiseaseK02HL080081 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI VEGLIA, GIANLUIGI · 2005 to 2009
$539k
NHLBI NIH HHS HL080081NHLBI NIH HHS K02 HL080081NIGMS NIH HHS GM08700NIGMS NIH HHS GM64742NIGMS NIH HHS R01 GM064742NIGMS NIH HHS R01 GM072701NIGMS NIH HHS T32 GM008700
6 · The paper itself

Abstract

Extensive X-ray crystallographic studies carried out on the catalytic-subunit of protein kinase A (PKA-C) enabled the atomic characterization of inhibitor and/or substrate peptide analogues trapped at its active site. Yet, the structural and dynamic transitions of these peptides from the free to the bound state are missing. These conformational transitions are central to understanding molecular recognition and the enzymatic cycle. NMR spectroscopy allows one to study these phenomena under functionally relevant conditions. However, the amounts of isotopically labeled peptides required for this technique present prohibitive costs for solid-phase peptide synthesis. To enable NMR studies, we have optimized both expression and purification of isotopically enriched substrate/inhibitor peptides using a recombinant fusion protein system. Three of these peptides correspond to the cytoplasmic regions of the wild-type and lethal mutants of the membrane protein phospholamban, while the fourth peptide correspond to the binding epitope of the heat-stable protein kinase inhibitor (PKI(5-24)). The target peptides were fused to the maltose binding protein (MBP), which is further purified using a His(6) tag approach. This convenient protocol allows for the purification of milligram amounts of peptides necessary for NMR analysis.

Indexed as

Amino Acid SequenceBinding SitesCarrier ProteinsCatalytic DomainCyclic AMP-Dependent Protein KinasesIsotope LabelingMagnetic Resonance SpectroscopyMaltose-Binding ProteinsModels, GeneticMolecular Sequence DataPeptide FragmentsRecombinant Fusion ProteinsSubstrate SpecificityCarrier ProteinsCyclic AMP-Dependent Protein KinasesMaltose-Binding ProteinsPeptide Fragmentsprotein kinase inhibitor peptide (5-24)Recombinant Fusion Proteins

Identifiers

PMID19027069
PMCPMC2699774
OpenAlexW2118935037

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.