Evidence map›Paper›PMID 19025732›Full record

ReviewChemphyschem : a European journal of chemical physics and physical chemistry2009

DCDHF fluorophores for single-molecule imaging in cells.

Samuel J Lord, Nicholas R Conley, Hsiao-Lu D Lee, Stefanie Y Nishimura, Andrea K Pomerantz, Katherine A Willets, Zhikuan Lu, Hui Wang, Na Liu, Reichel Samuel and 5 more

Abstract readReview
In one paragraph

Review in Chemphyschem : a European journal of chemical physics and physical chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Characterization of novel perylene diimides containing aromatic amino acid side chains.Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy · 2016
    Article
  10. Fluorescence microscopy visualization of contacts between objects.Angewandte Chemie (International ed. in English) · 2015
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Fluorescent penetration enhancers for transdermal applications.Journal of controlled release : official journal of the Controlled Release Society · 2012
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Synchronously amplified fluorescence image recovery (SAFIRe).The journal of physical chemistry. B · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Samuel J LordDepartment of Chemistry, Stanford University, Stanford, California 94305, USA.
Nicholas R Conley
Hsiao-Lu D Lee
Stefanie Y Nishimura
Andrea K Pomerantz
Katherine A Willets
Zhikuan Lu
Hui Wang
Na Liu
Reichel Samuel
Ryan Weber
Alexander Semyonov
Meng He
Robert J Twieg
W E Moerner

Funding

Subcellular architecture of regulatory protein complexes at the bacterial poleR01GM086196 · NIGMS · STANFORD UNIVERSITY · PI MOERNER, WILLIAM E, SHAPIRO, LUCILLE · 2008 to 2015
$4.7M
Single-Molecule Fluorophores for Cellular Imaging(RMI)P20HG003638 · NHGRI · STANFORD UNIVERSITY · PI MOERNER, WILLIAM E · 2004 to 2008
$3.0M
NHGRI NIH HHS P20 HG003638NHGRI NIH HHS P20-HG003638-04NIGMS NIH HHS R01 GM086196
6 · The paper itself

Abstract

There is a persistent need for small-molecule fluorescent labels optimized for single-molecule imaging in the cellular environment. Application of these labels comes with a set of strict requirements: strong absorption, efficient and stable emission, water solubility and membrane permeability, low background emission, and red-shifted absorption to avoid cell autofluorescence. We have designed and characterized several fluorophores, termed "DCDHF" fluorophores, for use in live-cell imaging based on the push-pull design: an amine donor group and a 2-dicyanomethylene-3-cyano-2,5-dihydrofuran (DCDHF) acceptor group, separated by a pi-rich conjugated network. In general, the DCDHF fluorophores are comparatively photostable, sensitive to local environment, and their chemistries and photophysics are tunable to optimize absorption wavelength, membrane affinity, and solubility. Especially valuable are fluorophores with sophisticated photophysics for applications requiring additional facets of control, such as photoactivation. For example, we have reengineered a red-emitting DCDHF fluorophore so that it is dark until photoactivated with a short burst of low-intensity violet light. This molecule and its relatives provide a new class of bright photoactivatable small-molecule fluorophores, which are needed for super-resolution imaging schemes that require active control (here turning-on) of single-molecule emission.

Indexed as

AnimalsCHO CellsCricetinaeCricetulusFluorescent DyesFuransMolecular ConformationNitrilesPeptidesPhotochemistryFluorescent DyesFuransNitrilesPeptides

Identifiers

PMID19025732
PMCPMC2688640

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.