Evidence map›Paper›PMID 19019990›Full record

ArticleDevelopment (Cambridge, England)2009

Brachyury null mutant-induced defects in juvenile ascidian endodermal organs.

Shota Chiba, Di Jiang, Noriyuki Satoh, William C Smith

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Article
  3. Snail Transcriptionally RepressesInternational journal of molecular sciences · 2024
    Article
  4. Review
  5. Article
  6. Brachyury controlsDevelopment (Cambridge, England) · 2021
    Article
  7. Article
  8. Fgf-driven Tbx protein activities directly induceDevelopment (Cambridge, England) · 2020
    Article
  9. Tunicate gastrulation.Current topics in developmental biology · 2020
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Functional and evolutionary insights from theDevelopment (Cambridge, England) · 2017
    Article
  15. Cas9-mediated excision ofDevelopment (Cambridge, England) · 2017
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Shota ChibaDepartment of Molecular, Cell and Developmental Biology, University of California Santa Barbara, Santa Barbara, CA 93106, USA.
Di Jiang
Noriyuki Satoh
William C Smith
University of California, Santa Barbara · US

Funding

Mutational Analysis of Tunicate DevelopmentR01HD038701 · NICHD · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI SMITH, WILLIAM · 2000 to 2020
$5.8M
Ascidian Stock Center (ASC)R24GM075049 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI SMITH, WILLIAM · 2006 to 2009
$1.3M
NICHD NIH HHS HD38701NIGMS NIH HHS GM075049
6 · The paper itself

Abstract

We report the isolation of a recessive ENU-induced short-tailed mutant in the ascidian Ciona intestinalis that is the product of a premature stop in the brachyury gene. Notochord differentiation and morphogenesis are severely disrupted in the mutant line. At the larval stage, variable degrees of ectopic endoderm staining were observed in the homozygous mutants, indicating that loss of brachyury results in stochastic fate transformation. In post-metamorphosis mutants, a uniform defect in tail resorption was observed, together with variable defects in digestive tract development. Some cells misdirected from the notochord lineage were found to be incorporated into definitive endodermal structures, such as stomach and intestine.

Indexed as

Amino Acid SequenceAnimalsBase SequenceBiomarkersBrachyury ProteinCell LineageCiona intestinalisDNA Mutational AnalysisEndodermEthylnitrosoureaFetal ProteinsGastrointestinal TractMetamorphosis, BiologicalMolecular Sequence DataMutationNotochordBiomarkersBrachyury ProteinEthylnitrosoureaFetal ProteinsT-Box Domain Proteins

Identifiers

PMID19019990
PMCPMC2685961
OpenAlexW2083502895

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.